Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   OQ460_RS06200 Genome accession   NZ_CP110853
Coordinates   1358818..1359876 (+) Length   352 a.a.
NCBI ID   WP_084381341.1    Uniprot ID   -
Organism   Pseudomonas sp. 16FHM2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1344613..1359876 1358818..1359876 within 0


Gene organization within MGE regions


Location: 1344613..1359876
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OQ460_RS06095 (OQ460_06070) - 1344613..1345341 (+) 729 WP_410020821.1 helix-turn-helix transcriptional regulator -
  OQ460_RS06100 (OQ460_06075) - 1345936..1346277 (+) 342 WP_410020822.1 phage holin family protein -
  OQ460_RS06105 (OQ460_06080) - 1346302..1346826 (+) 525 WP_410020823.1 hypothetical protein -
  OQ460_RS06110 (OQ460_06085) - 1346819..1347430 (+) 612 WP_410020824.1 phage baseplate assembly protein V -
  OQ460_RS06115 (OQ460_06090) - 1347440..1347772 (+) 333 WP_410020825.1 phage baseplate protein -
  OQ460_RS06120 (OQ460_06095) - 1347769..1348764 (+) 996 WP_410020826.1 baseplate J/gp47 family protein -
  OQ460_RS06125 (OQ460_06100) - 1348761..1349489 (+) 729 WP_410020827.1 phage tail protein I -
  OQ460_RS06130 (OQ460_06105) - 1349486..1350037 (+) 552 WP_410020828.1 hypothetical protein -
  OQ460_RS06135 (OQ460_06110) - 1350053..1350682 (+) 630 WP_410020829.1 hypothetical protein -
  OQ460_RS06140 (OQ460_06115) - 1350684..1350932 (+) 249 WP_410020830.1 tail fiber assembly protein -
  OQ460_RS06145 (OQ460_06120) - 1351020..1351223 (+) 204 WP_410020831.1 hypothetical protein -
  OQ460_RS06150 (OQ460_06125) - 1351226..1352392 (+) 1167 WP_410020832.1 phage tail protein -
  OQ460_RS06155 (OQ460_06130) - 1352392..1352898 (+) 507 WP_410020833.1 phage major tail tube protein -
  OQ460_RS06160 (OQ460_06135) - 1352990..1353571 (+) 582 WP_410020834.1 phage tail assembly protein -
  OQ460_RS06165 (OQ460_06140) - 1353700..1355448 (+) 1749 WP_410020835.1 phage tail tape measure protein -
  OQ460_RS06170 (OQ460_06145) - 1355448..1355831 (+) 384 WP_410020836.1 phage tail protein -
  OQ460_RS06175 (OQ460_06150) - 1355824..1356036 (+) 213 WP_410020837.1 tail protein X -
  OQ460_RS06180 (OQ460_06155) - 1356046..1357056 (+) 1011 WP_410020838.1 phage late control D family protein -
  OQ460_RS06185 (OQ460_06160) - 1357077..1357634 (+) 558 WP_410020839.1 glycoside hydrolase family 19 protein -
  OQ460_RS06190 (OQ460_06165) - 1357616..1358152 (+) 537 WP_410020840.1 lysis system i-spanin subunit Rz -
  OQ460_RS06195 (OQ460_06170) - 1358234..1358734 (+) 501 WP_410020841.1 CinA family protein -
  OQ460_RS06200 (OQ460_06175) recA 1358818..1359876 (+) 1059 WP_084381341.1 recombinase RecA Machinery gene

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37509.06 Da        Isoelectric Point: 5.5038

>NTDB_id=756649 OQ460_RS06200 WP_084381341.1 1358818..1359876(+) (recA) [Pseudomonas sp. 16FHM2]
MDDNKKKALAAALGQIERQFGKGAVMRMGDHDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAIDVIVVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVAPPFRQAEFQILYGKGIYLNGEMIDLGVVHGFVEKSGAWYAYNGSKIGQGKANSAKFLQDNPDIAAALEK
QIRDKLLTAAPDVKAAANREPVDDMAEADADI

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=756649 OQ460_RS06200 WP_084381341.1 1358818..1359876(+) (recA) [Pseudomonas sp. 16FHM2]
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCACGACCGTCAGGCGATCCCGGCTATCTCCACAGGCTCTCTGGGTCTGGATATCGCACTCGGCATTGGCG
GCCTGCCTAAAGGCCGTATTGTTGAAATCTACGGCCCTGAATCTTCCGGTAAAACTACCCTGACCCTGTCGGTGATCGCG
CAGGCACAGAAGATGGGCGCCACCTGTGCGTTCGTCGATGCCGAGCACGCGCTGGATCCTGAATATGCCGGCAAGCTAGG
CGTCAACGTTGACGACCTGCTGGTTTCGCAGCCAGACACTGGTGAGCAGGCCCTGGAAATCACCGACATGCTGGTCCGCT
CCAATGCCATCGACGTGATCGTTGTCGACTCCGTGGCCGCGCTGGTGCCAAAAGCGGAAATCGAAGGCGAAATGGGCGAC
ATGCATGTTGGCCTGCAAGCCCGTCTGATGTCCCAGGCGCTACGTAAAATCACCGGTAACATCAAGAATGCCAACTGCCT
GGTAATCTTCATCAACCAGATCCGGATGAAAATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAATGCGC
TGAAGTTCTACGCTTCGGTCCGTCTGGACATCCGCCGTACCGGCGCGGTGAAGGAAGGCGACGAGGTGGTGGGGAGCGAA
ACCCGTGTCAAGGTTGTGAAGAACAAAGTGGCTCCGCCTTTCCGTCAGGCGGAGTTCCAGATTCTCTACGGCAAGGGAAT
CTATCTGAATGGCGAGATGATCGATCTGGGTGTGGTGCATGGCTTCGTCGAGAAGTCCGGTGCCTGGTATGCCTACAACG
GCAGCAAGATCGGGCAGGGCAAAGCCAACTCGGCCAAGTTCCTGCAAGACAACCCAGATATTGCAGCCGCCCTCGAGAAG
CAGATTCGCGACAAGCTGCTGACTGCAGCGCCAGACGTCAAGGCAGCGGCCAACCGTGAACCTGTTGACGATATGGCTGA
AGCAGACGCTGATATCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

87.714

99.432

0.872
  recA Acinetobacter baylyi ADP1

73.926

99.148

0.733
  recA Acinetobacter baumannii D1279779

73.178

97.443

0.713
  recA Vibrio cholerae O1 biovar El Tor strain E7946

74.695

93.182

0.696
  recA Vibrio cholerae strain A1552

74.695

93.182

0.696
  recA Glaesserella parasuis strain SC1401

69.591

97.159

0.676
  recA Ralstonia pseudosolanacearum GMI1000

70.149

95.17

0.668
  recA Neisseria gonorrhoeae MS11

72.222

92.045

0.665
  recA Neisseria gonorrhoeae MS11

72.222

92.045

0.665
  recA Neisseria gonorrhoeae strain FA1090

72.222

92.045

0.665
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.526

92.898

0.599
  recA Helicobacter pylori strain NCTC11637

59.259

99.716

0.591
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.677

94.886

0.585
  recA Helicobacter pylori 26695

58.689

99.716

0.585
  recA Bacillus subtilis subsp. subtilis str. 168

61.682

91.193

0.562
  recA Streptococcus mutans UA159

59.692

92.33

0.551
  recA Streptococcus pyogenes NZ131

57.927

93.182

0.54
  recA Streptococcus pneumoniae TIGR4

58.104

92.898

0.54
  recA Streptococcus pneumoniae D39

58.104

92.898

0.54
  recA Streptococcus pneumoniae R6

58.104

92.898

0.54
  recA Streptococcus pneumoniae Rx1

58.104

92.898

0.54
  recA Streptococcus mitis SK321

58.333

92.045

0.537
  recA Streptococcus mitis NCTC 12261

58.333

92.045

0.537
  recA Latilactobacillus sakei subsp. sakei 23K

58.567

91.193

0.534
  recA Lactococcus lactis subsp. cremoris KW2

57.276

91.761

0.526
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.269

92.898

0.523