Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   OKX07_RS08355 Genome accession   NZ_CP110806
Coordinates   1875481..1876518 (+) Length   345 a.a.
NCBI ID   WP_265631364.1    Uniprot ID   -
Organism   Cellulomonas sp. S1-8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1870481..1881518
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OKX07_RS08340 (OKX07_08340) - 1871996..1872238 (+) 243 WP_265631361.1 DUF3046 domain-containing protein -
  OKX07_RS08345 (OKX07_08345) - 1872357..1874459 (+) 2103 WP_265631362.1 alkaline phosphatase family protein -
  OKX07_RS08350 (OKX07_08350) - 1874456..1875262 (+) 807 WP_265631363.1 MBL fold metallo-hydrolase -
  OKX07_RS08355 (OKX07_08355) recA 1875481..1876518 (+) 1038 WP_265631364.1 recombinase RecA Machinery gene
  OKX07_RS08360 (OKX07_08360) - 1876524..1877123 (+) 600 WP_265631365.1 regulatory protein RecX -
  OKX07_RS08365 (OKX07_08365) rny 1877392..1878924 (+) 1533 WP_265631366.1 ribonuclease Y -
  OKX07_RS08370 (OKX07_08370) - 1878944..1879825 (-) 882 WP_265631367.1 amino acid ABC transporter permease -
  OKX07_RS08375 (OKX07_08375) - 1879822..1880469 (-) 648 WP_265631856.1 amino acid ABC transporter permease -
  OKX07_RS08380 (OKX07_08380) - 1880560..1881450 (-) 891 WP_265631368.1 glutamate ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 36685.95 Da        Isoelectric Point: 5.5267

>NTDB_id=756235 OKX07_RS08355 WP_265631364.1 1875481..1876518(+) (recA) [Cellulomonas sp. S1-8]
MPAPDRAKALEAALSQIDRQFGKGSVMRLGDDGRAPVEVIPTGSIALDVALGIGGLPRGRVVEVYGPESSGKSTLALHAV
ANAQRAGGIAAFIDAEHALDPEYAKKLGVDTDALLVSQPDNGEQALEIMDTLIRSGAIDIIVIDSVAALVPKAEIEGEMG
DSHVGLQARLMSQALRKITGALNASGTTAIFINQLREKIGVFFGSPETTTGGKALKFYASIRLDIRRIETLKEGTEAVGN
RTRVKVVKNKMAPPFKQAEFDILYGVGISREGSLIDMGVEHGFVRKSGAWFTYEGDQLGQGKENARKFLRDNPDLANELD
KKILEKLGIGAKVDAPADAPVAVDF

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=756235 OKX07_RS08355 WP_265631364.1 1875481..1876518(+) (recA) [Cellulomonas sp. S1-8]
ATGCCCGCTCCGGACCGCGCGAAGGCCCTCGAGGCCGCACTCAGCCAGATCGACCGCCAGTTCGGCAAGGGGTCGGTCAT
GCGCCTCGGCGACGACGGCCGTGCGCCGGTCGAGGTGATCCCGACCGGCTCCATCGCGCTCGACGTCGCGCTCGGCATCG
GCGGCCTGCCGCGCGGGCGCGTCGTCGAGGTGTACGGGCCGGAGTCCTCCGGCAAGTCGACCCTCGCGCTGCACGCGGTC
GCCAACGCCCAGAGGGCCGGCGGCATCGCCGCGTTCATCGACGCCGAGCACGCCCTCGACCCCGAGTACGCCAAGAAGCT
GGGCGTCGACACCGACGCGCTGCTCGTCTCGCAGCCGGACAACGGCGAGCAGGCGCTCGAGATCATGGACACCCTGATCC
GCTCGGGCGCGATCGACATCATCGTCATCGACTCGGTCGCGGCCCTGGTGCCGAAGGCCGAGATCGAGGGCGAGATGGGG
GACTCGCACGTGGGTCTGCAGGCGCGGCTCATGTCGCAGGCGCTGCGCAAGATCACCGGCGCGCTCAACGCGTCGGGGAC
CACGGCGATCTTCATCAACCAGCTGCGCGAGAAGATCGGCGTGTTCTTCGGCAGCCCCGAGACCACGACCGGTGGCAAGG
CGCTCAAGTTCTACGCGTCGATCCGCCTGGACATCCGCCGCATCGAGACCCTCAAGGAGGGCACCGAGGCGGTCGGCAAC
CGCACGCGCGTCAAGGTCGTCAAGAACAAGATGGCCCCGCCGTTCAAGCAGGCCGAGTTCGACATCCTCTACGGCGTCGG
GATCTCCCGCGAGGGCTCGCTCATCGACATGGGCGTCGAGCACGGCTTCGTCCGCAAGTCGGGTGCGTGGTTCACGTACG
AGGGCGACCAGCTGGGCCAGGGCAAGGAGAACGCGCGCAAGTTCCTGCGCGACAACCCGGACCTGGCCAACGAGCTGGAC
AAGAAGATCCTCGAGAAGCTCGGCATCGGCGCGAAGGTCGACGCCCCCGCCGACGCCCCGGTCGCCGTCGACTTCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

67.802

93.623

0.635
  recA Vibrio cholerae O1 biovar El Tor strain E7946

67.802

93.623

0.635
  recA Pseudomonas stutzeri DSM 10701

67.183

93.623

0.629
  recA Acinetobacter baylyi ADP1

66.563

93.623

0.623
  recA Acinetobacter baumannii D1279779

66.563

93.623

0.623
  recA Ralstonia pseudosolanacearum GMI1000

67.732

90.725

0.614
  recA Bacillus subtilis subsp. subtilis str. 168

64.923

94.203

0.612
  recA Neisseria gonorrhoeae MS11

65.217

93.333

0.609
  recA Neisseria gonorrhoeae MS11

65.217

93.333

0.609
  recA Neisseria gonorrhoeae strain FA1090

65.217

93.333

0.609
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.09

97.101

0.603
  recA Helicobacter pylori 26695

60.947

97.971

0.597
  recA Helicobacter pylori strain NCTC11637

60.947

97.971

0.597
  recA Latilactobacillus sakei subsp. sakei 23K

59.71

100

0.597
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.446

96.232

0.591
  recA Glaesserella parasuis strain SC1401

62.733

93.333

0.586
  recA Lactococcus lactis subsp. cremoris KW2

61.61

93.623

0.577
  recA Streptococcus pyogenes NZ131

59.756

95.072

0.568
  recA Streptococcus mutans UA159

59.271

95.362

0.565
  recA Streptococcus pneumoniae D39

58.663

95.362

0.559
  recA Streptococcus pneumoniae TIGR4

58.663

95.362

0.559
  recA Streptococcus mitis NCTC 12261

58.663

95.362

0.559
  recA Streptococcus mitis SK321

58.663

95.362

0.559
  recA Streptococcus pneumoniae R6

58.663

95.362

0.559
  recA Streptococcus pneumoniae Rx1

58.663

95.362

0.559
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.204

93.623

0.545