Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   BBP27_RS04275 Genome accession   NZ_CP110721
Coordinates   896639..897685 (+) Length   348 a.a.
NCBI ID   WP_003680794.1    Uniprot ID   A0A9X9QZK1
Organism   Neisseria sp. RH3002v2g     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 891639..902685
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBP27_RS04265 - 892496..895060 (+) 2565 WP_188211954.1 glycoside hydrolase family 66 protein -
  BBP27_RS04270 aroA 895199..896491 (+) 1293 WP_188211953.1 3-phosphoshikimate 1-carboxyvinyltransferase -
  BBP27_RS04275 recA 896639..897685 (+) 1047 WP_003680794.1 recombinase RecA Machinery gene
  BBP27_RS04280 fghA 897778..898626 (-) 849 WP_188211952.1 S-formylglutathione hydrolase -
  BBP27_RS04285 - 899123..900835 (+) 1713 WP_188211951.1 proline--tRNA ligase -
  BBP27_RS04290 pflA 900901..901707 (-) 807 WP_188211950.1 pyruvate formate lyase 1-activating protein -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37603.90 Da        Isoelectric Point: 4.8967

>NTDB_id=755997 BBP27_RS04275 WP_003680794.1 896639..897685(+) (recA) [Neisseria sp. RH3002v2g]
MSDEKSKALAAALAQIEKNFGKGSIMKMDGSQQEENLDVISTGSLGVDLALGVGGLPRGRVVEIFGPESSGKTTLCLEAI
AQCQKNGGICAFIDAEHAFDPIYARKLGVKVEELYLSQPDTGEQALEICDTLVRSGGIDMVVVDSVAALVPKAEIEGEMG
DSHVGLQARLMSQALRKLTGHIKRTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGQIKKGDDVIGN
ETKVKVIKNKVAPPFRQAEFDILYGEGISWEGELIDLGVKHDIVEKSGAWYSYNGAKIGQGKDNVRVWLKENPDIANEID
AKIRAAVGINVDITEGKLDDTDGERPEE

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=755997 BBP27_RS04275 WP_003680794.1 896639..897685(+) (recA) [Neisseria sp. RH3002v2g]
ATGTCAGACGAAAAAAGCAAAGCCTTAGCCGCCGCCCTTGCCCAAATCGAAAAAAACTTCGGCAAAGGCTCCATCATGAA
AATGGACGGCAGCCAACAGGAAGAAAACCTTGATGTTATTTCCACCGGCTCCCTCGGCGTGGACTTGGCGCTCGGCGTCG
GCGGCCTGCCCCGCGGCCGCGTGGTTGAAATATTCGGCCCGGAATCCTCCGGTAAAACCACTCTCTGTCTCGAAGCCATT
GCCCAATGCCAAAAAAATGGCGGCATCTGTGCATTCATCGATGCCGAGCATGCTTTTGACCCGATTTACGCCCGCAAACT
CGGCGTAAAAGTCGAAGAACTCTATCTCTCCCAACCGGATACCGGCGAACAGGCATTGGAAATCTGCGATACCTTGGTAC
GCTCCGGCGGTATCGATATGGTCGTTGTCGACTCCGTAGCGGCACTTGTGCCTAAAGCCGAGATCGAAGGCGAAATGGGC
GACAGCCACGTCGGCCTGCAAGCCCGCCTGATGAGCCAAGCCTTGCGCAAACTGACCGGCCACATCAAACGCACCAATAC
ATTGGTTGTTTTCATTAACCAAATCCGTATGAAAATCGGTGTGATGTTCGGCAGCCCTGAAACCACAACCGGCGGTAACG
CGCTCAAATTCTACGCCTCCGTCCGCCTCGACATCCGCCGTACCGGTCAGATTAAAAAAGGCGATGACGTGATTGGTAAC
GAAACCAAAGTCAAAGTCATCAAAAACAAAGTTGCGCCTCCATTCCGTCAAGCCGAATTCGATATTCTTTACGGCGAAGG
CATCAGCTGGGAAGGCGAATTGATCGACTTAGGCGTCAAACATGACATCGTTGAAAAATCCGGCGCATGGTACAGCTACA
ACGGCGCAAAAATCGGCCAAGGTAAAGACAATGTACGCGTTTGGCTGAAAGAAAACCCTGATATCGCCAATGAAATCGAC
GCCAAAATCCGTGCGGCAGTTGGTATCAATGTCGATATTACCGAAGGCAAATTGGACGATACCGACGGCGAACGTCCTGA
GGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Neisseria gonorrhoeae MS11

90.23

100

0.902
  recA Neisseria gonorrhoeae MS11

90.23

100

0.902
  recA Neisseria gonorrhoeae strain FA1090

90.23

100

0.902
  recA Ralstonia pseudosolanacearum GMI1000

76.364

94.828

0.724
  recA Acinetobacter baylyi ADP1

71.914

93.103

0.67
  recA Pseudomonas stutzeri DSM 10701

71.692

93.391

0.67
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.988

93.103

0.661
  recA Vibrio cholerae strain A1552

70.988

93.103

0.661
  recA Glaesserella parasuis strain SC1401

70.122

94.253

0.661
  recA Acinetobacter baumannii D1279779

70.37

93.103

0.655
  recA Helicobacter pylori strain NCTC11637

65.569

95.977

0.629
  recA Helicobacter pylori 26695

65.569

95.977

0.629
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.061

94.828

0.626
  recA Bacillus subtilis subsp. subtilis str. 168

66.061

94.828

0.626
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.159

94.253

0.624
  recA Latilactobacillus sakei subsp. sakei 23K

61.516

98.563

0.606
  recA Streptococcus mutans UA159

59.259

100

0.598
  recA Streptococcus pneumoniae D39

59.195

100

0.592
  recA Streptococcus pneumoniae Rx1

59.195

100

0.592
  recA Streptococcus pneumoniae R6

59.195

100

0.592
  recA Streptococcus pneumoniae TIGR4

59.195

100

0.592
  recA Streptococcus mitis NCTC 12261

59.593

98.851

0.589
  recA Lactococcus lactis subsp. cremoris KW2

61.212

94.828

0.58
  recA Streptococcus pyogenes NZ131

61.212

94.828

0.58
  recA Streptococcus mitis SK321

60.606

94.828

0.575
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.939

93.966

0.563