Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ONZ57_RS05130 Genome accession   NZ_CP110654
Coordinates   1057407..1058468 (-) Length   353 a.a.
NCBI ID   WP_005315774.1    Uniprot ID   H9XWV5
Organism   Aeromonas salmonicida strain AS1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1052407..1063468
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ONZ57_RS05115 (ONZ57_05120) - 1052575..1053822 (-) 1248 WP_005315763.1 aspartate kinase -
  ONZ57_RS05120 (ONZ57_05125) alaS 1053839..1056463 (-) 2625 WP_017412245.1 alanine--tRNA ligase -
  ONZ57_RS05125 (ONZ57_05130) - 1056862..1057371 (-) 510 WP_005315770.1 regulatory protein RecX -
  ONZ57_RS05130 (ONZ57_05135) recA 1057407..1058468 (-) 1062 WP_005315774.1 recombinase RecA Machinery gene
  ONZ57_RS05135 (ONZ57_05140) pncC 1058549..1059040 (-) 492 WP_005315776.1 nicotinamide-nucleotide amidase -
  ONZ57_RS05140 (ONZ57_05145) ybaK 1059242..1059715 (+) 474 WP_005315779.1 Cys-tRNA(Pro) deacylase -
  ONZ57_RS05145 (ONZ57_05150) - 1059756..1060496 (-) 741 WP_017412243.1 GNAT family N-acetyltransferase -
  ONZ57_RS05150 (ONZ57_05155) - 1060486..1060923 (-) 438 WP_042467558.1 rhodanese-like domain-containing protein -
  ONZ57_RS05155 (ONZ57_05160) - 1061009..1061497 (-) 489 WP_042467559.1 OsmC family protein -
  ONZ57_RS05160 (ONZ57_05165) - 1061629..1063056 (+) 1428 WP_042467561.1 PLP-dependent aminotransferase family protein -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 37982.76 Da        Isoelectric Point: 4.8912

>NTDB_id=755750 ONZ57_RS05130 WP_005315774.1 1057407..1058468(-) (recA) [Aeromonas salmonicida strain AS1]
MDQNKQKALAAALGQIEKQFGKGSIMRLGDSKTMDIEAISTGSLSLDVALGIGGLPCGRIVEIYGPESSGKTTLTLQVIA
EAQKKGKVCAFIDAEHALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDSVAALTPKAEIEGEMGD
SHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGNE
TRVKVVKNKVAPPFKQAEFQIFYGVGISKEGELVDLGVKHKLIDKAGAWYSYNGEKIGQGKANVMKLFTENKVMAAEVEA
RLRELLLSGDVPAEKPVVADADELEAESEQEFE

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=755750 ONZ57_RS05130 WP_005315774.1 1057407..1058468(-) (recA) [Aeromonas salmonicida strain AS1]
ATGGATCAGAACAAACAGAAGGCACTGGCGGCTGCGCTGGGTCAGATTGAAAAGCAGTTCGGCAAAGGCTCCATCATGCG
TCTGGGCGACAGCAAGACCATGGATATCGAAGCCATCTCTACCGGTTCCCTCTCCCTGGACGTGGCGCTGGGTATCGGCG
GTCTGCCGTGCGGCCGTATCGTCGAGATCTATGGCCCGGAATCTTCCGGTAAAACCACCCTCACCCTGCAGGTGATTGCG
GAAGCCCAGAAGAAAGGCAAGGTCTGTGCATTTATCGATGCAGAGCATGCCCTCGACCCCATCTATGCAGCCAAGCTGGG
TGTCAACGTCGATGACCTGCTGATCTCCCAGCCGGATACCGGTGAGCAGGCGCTGGAAATCTGCGACATGCTGGTGCGTT
CCAACGCCGTTGACGTCATCATCGTCGACTCGGTGGCCGCTCTGACGCCGAAAGCAGAAATCGAAGGCGAGATGGGTGAT
TCCCACGTCGGCCTGCAGGCTCGTCTGATGTCCCAGGCGCTGCGCAAGCTGACCGCCAACATCAAGAACGCCAACTGCCT
CTGTATCTTCATCAACCAAATCCGGATGAAGATTGGTGTCATGTTCGGCAGCCCGGAAACCACTACCGGTGGTAACGCGC
TCAAGTTCTACGCCTCAGTACGTCTGGACATCCGTCGCATCGGCGCCATCAAGGAAGGTGACGAAGTGGTCGGTAACGAG
ACCCGCGTCAAGGTGGTCAAGAACAAGGTTGCCCCTCCCTTCAAGCAGGCTGAATTCCAGATTTTCTACGGTGTCGGTAT
TTCCAAGGAAGGTGAGCTGGTGGATCTCGGCGTCAAGCACAAGCTGATCGACAAGGCCGGTGCCTGGTACAGCTATAACG
GCGAGAAGATAGGTCAGGGCAAGGCCAACGTGATGAAGCTGTTCACCGAGAACAAGGTGATGGCGGCCGAGGTGGAAGCC
AGACTGCGTGAGTTGCTGCTCTCCGGCGATGTGCCGGCCGAGAAGCCGGTCGTGGCGGATGCCGACGAGCTCGAAGCCGA
AAGCGAACAAGAGTTCGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB H9XWV5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

76.59

98.017

0.751
  recA Vibrio cholerae strain A1552

75.071

100

0.751
  recA Vibrio cholerae O1 biovar El Tor strain E7946

75.071

100

0.751
  recA Glaesserella parasuis strain SC1401

69.688

100

0.697
  recA Acinetobacter baumannii D1279779

74.695

92.918

0.694
  recA Acinetobacter baylyi ADP1

74.085

92.918

0.688
  recA Neisseria gonorrhoeae MS11

71.779

92.351

0.663
  recA Neisseria gonorrhoeae MS11

71.779

92.351

0.663
  recA Neisseria gonorrhoeae strain FA1090

71.779

92.351

0.663
  recA Ralstonia pseudosolanacearum GMI1000

74.92

88.102

0.66
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.144

90.368

0.598
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.444

93.768

0.595
  recA Helicobacter pylori strain NCTC11637

64.308

92.068

0.592
  recA Streptococcus mitis SK321

59.259

99.433

0.589
  recA Helicobacter pylori 26695

63.692

92.068

0.586
  recA Streptococcus pneumoniae Rx1

58.739

98.867

0.581
  recA Streptococcus pneumoniae TIGR4

58.739

98.867

0.581
  recA Streptococcus pneumoniae R6

58.739

98.867

0.581
  recA Streptococcus pneumoniae D39

58.739

98.867

0.581
  recA Bacillus subtilis subsp. subtilis str. 168

63.551

90.935

0.578
  recA Latilactobacillus sakei subsp. sakei 23K

60.237

95.467

0.575
  recA Streptococcus mitis NCTC 12261

61.3

91.501

0.561
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.878

93.201

0.558
  recA Streptococcus mutans UA159

60.372

91.501

0.552
  recA Streptococcus pyogenes NZ131

60.062

91.501

0.55
  recA Lactococcus lactis subsp. cremoris KW2

58.204

91.501

0.533