Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   OKW98_RS23625 Genome accession   NZ_CP110644
Coordinates   5310306..5311370 (-) Length   354 a.a.
NCBI ID   WP_265386898.1    Uniprot ID   -
Organism   Pseudomonas sp. KU26590     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5305306..5316370
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OKW98_RS23600 (OKW98_23605) - 5305957..5306841 (+) 885 WP_265386896.1 DMT family transporter -
  OKW98_RS23605 (OKW98_23610) - 5306905..5307636 (-) 732 WP_265389822.1 tRNA-uridine aminocarboxypropyltransferase -
  OKW98_RS23610 (OKW98_23615) - 5307859..5308284 (+) 426 WP_065989783.1 quorum-sensing-regulated virulence factor family protein -
  OKW98_RS23615 (OKW98_23620) - 5308666..5309781 (+) 1116 WP_265386897.1 LOG family protein -
  OKW98_RS23620 (OKW98_23625) recX 5309830..5310297 (-) 468 WP_237253766.1 recombination regulator RecX -
  OKW98_RS23625 (OKW98_23630) recA 5310306..5311370 (-) 1065 WP_265386898.1 recombinase RecA Machinery gene
  OKW98_RS23630 (OKW98_23635) - 5311456..5311956 (-) 501 WP_416147615.1 CinA family protein -
  OKW98_RS23635 (OKW98_23640) - 5312060..5312191 (-) 132 WP_265386899.1 hypothetical protein -
  OKW98_RS23640 (OKW98_23645) mutS 5312452..5315019 (+) 2568 WP_265389824.1 DNA mismatch repair protein MutS -
  OKW98_RS23645 (OKW98_23650) fdxA 5315259..5315582 (+) 324 WP_265386900.1 ferredoxin FdxA -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 37706.30 Da        Isoelectric Point: 5.5202

>NTDB_id=755597 OKW98_RS23625 WP_265386898.1 5310306..5311370(-) (recA) [Pseudomonas sp. KU26590]
MDDNKKKALAAALGQIERQFGKGAVMRMGDHDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
EAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAIDVIVVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKTANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVAPPFRQAEFQILYGKGIYRNGEIIDLGVLHGLLEKSGAWYSYQGSKIGQGKANSAKFLADNPEIGTTLEK
LIREKLLTAAPDVKAQSSRVAADDVAEVEADADI

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=755597 OKW98_RS23625 WP_265386898.1 5310306..5311370(-) (recA) [Pseudomonas sp. KU26590]
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCTTGGGTCAGATCGAGCGTCAATTCGGCAAAGGTGCCGTAATGCG
CATGGGTGACCATGACCGCCAGGCTATTCCTGCTATCTCCACCGGCTCGCTGGGTCTCGATATCGCACTCGGTATCGGTG
GCCTGCCAAAAGGCCGGATCGTTGAAATCTACGGCCCGGAATCTTCGGGTAAAACCACCCTCACTCTGTCCGTGATCGCA
GAAGCCCAGAAAATGGGTGCCACCTGCGCATTCGTCGACGCCGAGCACGCGCTCGATCCAGAGTACGCCGGCAAGCTGGG
CGTCAACGTTGACGACCTGCTGGTCTCCCAGCCAGACACCGGCGAACAGGCCCTCGAAATCACCGACATGCTGGTGCGTT
CGAACGCCATTGACGTCATCGTCGTCGACTCCGTGGCCGCTCTGGTACCAAAAGCTGAAATCGAAGGCGAAATGGGCGAC
ATGCACGTCGGCCTGCAAGCCCGACTGATGTCCCAGGCGCTGCGTAAGATCACCGGTAACATCAAGACTGCCAACTGCCT
CGTTATCTTCATCAACCAGATCCGTATGAAGATCGGTGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCAT
TGAAGTTCTATGCGTCGGTCCGTCTGGACATCCGCCGTACGGGCGCGGTCAAGGAAGGCGACGAAGTCGTCGGTAGCGAA
ACCCGCGTCAAAGTCGTGAAGAACAAGGTGGCCCCGCCGTTCCGTCAGGCTGAGTTCCAGATTCTCTACGGCAAGGGCAT
CTACCGTAACGGCGAGATCATCGACCTCGGCGTGCTGCACGGTTTGCTGGAGAAATCCGGTGCCTGGTACAGCTATCAGG
GCAGCAAGATCGGTCAAGGTAAAGCCAACTCCGCGAAGTTCCTGGCGGACAACCCGGAAATCGGCACCACCCTCGAGAAG
CTGATTCGCGAGAAACTGCTGACCGCAGCGCCTGATGTGAAGGCCCAATCGTCCCGCGTTGCGGCAGACGATGTGGCTGA
AGTCGAAGCTGACGCGGACATCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

87.571

100

0.876
  recA Acinetobacter baylyi ADP1

74.359

99.153

0.737
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.043

97.458

0.712
  recA Vibrio cholerae strain A1552

73.043

97.458

0.712
  recA Acinetobacter baumannii D1279779

74.699

93.785

0.701
  recA Ralstonia pseudosolanacearum GMI1000

71.045

94.633

0.672
  recA Glaesserella parasuis strain SC1401

68.588

98.023

0.672
  recA Neisseria gonorrhoeae MS11

72.222

91.525

0.661
  recA Neisseria gonorrhoeae MS11

72.222

91.525

0.661
  recA Neisseria gonorrhoeae strain FA1090

72.222

91.525

0.661
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.138

92.373

0.602
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.174

94.35

0.596
  recA Helicobacter pylori strain NCTC11637

62.997

92.373

0.582
  recA Helicobacter pylori 26695

62.385

92.373

0.576
  recA Bacillus subtilis subsp. subtilis str. 168

61.994

90.678

0.562
  recA Streptococcus pneumoniae TIGR4

56.125

99.153

0.556
  recA Streptococcus pneumoniae Rx1

56.125

99.153

0.556
  recA Streptococcus pneumoniae D39

56.125

99.153

0.556
  recA Streptococcus pneumoniae R6

56.125

99.153

0.556
  recA Streptococcus mutans UA159

60.308

91.808

0.554
  recA Streptococcus pyogenes NZ131

54.93

100

0.551
  recA Streptococcus mitis SK321

55.714

98.87

0.551
  recA Streptococcus mitis NCTC 12261

58.824

91.243

0.537
  recA Latilactobacillus sakei subsp. sakei 23K

60.897

88.136

0.537
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.748

92.09

0.523
  recA Lactococcus lactis subsp. cremoris KW2

56.347

91.243

0.514