Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   OOT55_RS06750 Genome accession   NZ_CP110629
Coordinates   1584522..1585553 (-) Length   343 a.a.
NCBI ID   WP_265368352.1    Uniprot ID   -
Organism   Marinimicrobium sp. C6131     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1579522..1590553
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OOT55_RS06720 (OOT55_06720) - 1579932..1580339 (+) 408 WP_024460491.1 HU family DNA-binding protein -
  OOT55_RS06725 (OOT55_06725) - 1580381..1580863 (-) 483 WP_265368347.1 HIT domain-containing protein -
  OOT55_RS06730 (OOT55_06730) - 1580995..1582722 (+) 1728 WP_265368348.1 proline--tRNA ligase -
  OOT55_RS06735 (OOT55_06735) - 1582743..1583336 (+) 594 WP_265368349.1 lytic transglycosylase domain-containing protein -
  OOT55_RS06740 (OOT55_06740) - 1583308..1583799 (-) 492 WP_265368350.1 regulatory protein RecX -
  OOT55_RS06745 (OOT55_06745) - 1583809..1584375 (-) 567 WP_265368351.1 DUF4136 domain-containing protein -
  OOT55_RS06750 (OOT55_06750) recA 1584522..1585553 (-) 1032 WP_265368352.1 recombinase RecA Machinery gene
  OOT55_RS06755 (OOT55_06755) - 1585658..1586191 (-) 534 WP_265368353.1 CinA family protein -
  OOT55_RS06760 (OOT55_06760) mutS 1586295..1588916 (+) 2622 WP_265368354.1 DNA mismatch repair protein MutS -
  OOT55_RS06765 (OOT55_06765) fdxA 1588961..1589284 (+) 324 WP_036159885.1 ferredoxin FdxA -
  OOT55_RS06770 (OOT55_06770) rpoS 1589354..1590361 (-) 1008 WP_265368355.1 RNA polymerase sigma factor RpoS -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 37006.22 Da        Isoelectric Point: 4.9466

>NTDB_id=755446 OOT55_RS06750 WP_265368352.1 1584522..1585553(-) (recA) [Marinimicrobium sp. C6131]
MDANKEKALQAALGQIERQFGKGTVMRMGDRERVAIPAISTGSLGLDAALGIGGLPKGRVVEIYGPESSGKTTLTLQVIA
EAQRQGGTCAFIDAEHALDPIYAEKLGVNVDDLIISQPDTGEQALEVSDMLVRSGAVDVLVVDSVAALTPRAEIEGEMGD
QHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGSVKEGDEVIGNE
TRVKVVKNKVAPPFKQTEFQILYGSGINRFGEVIDYGVKLGIVDKAGAWYSYNGDKIGQGKNNVVKFLQENPTIAQEMEK
RVRGELLNIPATSEENVEEESEA

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=755446 OOT55_RS06750 WP_265368352.1 1584522..1585553(-) (recA) [Marinimicrobium sp. C6131]
ATGGACGCGAATAAAGAGAAAGCGCTACAGGCCGCCTTAGGCCAGATTGAACGTCAATTTGGTAAAGGCACGGTCATGCG
CATGGGCGATCGTGAACGGGTGGCGATTCCCGCCATTTCCACGGGCTCTCTGGGGCTGGATGCCGCCCTCGGTATTGGCG
GCCTGCCCAAGGGGCGGGTGGTCGAGATTTACGGGCCGGAATCGTCCGGTAAAACCACCTTGACGCTGCAGGTGATTGCC
GAAGCCCAGCGTCAGGGAGGCACCTGCGCCTTTATCGACGCCGAGCACGCGCTGGATCCGATTTACGCCGAAAAGTTGGG
CGTCAATGTGGATGACCTGATCATCTCTCAACCGGATACCGGTGAGCAGGCCCTGGAGGTCAGCGATATGCTGGTGCGCT
CCGGCGCGGTTGATGTGCTGGTGGTGGACTCGGTGGCGGCGTTGACGCCCCGCGCGGAAATTGAAGGCGAGATGGGCGAT
CAGCATGTGGGCCTGCAGGCTCGTCTGATGTCCCAGGCACTGCGTAAAATTACCGGCAACATCAAAAATGCCAACTGTCT
GGTGATTTTCATCAACCAGATTCGTATGAAGATCGGTGTGATGTTTGGCAGCCCGGAAACCACCACCGGTGGTAACGCGC
TCAAGTTCTACTCCTCGGTTCGCCTGGATATCCGGCGCATCGGATCGGTCAAGGAGGGCGATGAGGTCATCGGTAATGAA
ACCCGGGTGAAAGTGGTCAAGAACAAGGTGGCACCGCCGTTCAAACAAACTGAGTTCCAGATTCTGTACGGGAGTGGTAT
CAACCGCTTCGGTGAGGTCATCGACTACGGGGTAAAGCTTGGTATTGTGGACAAGGCCGGTGCCTGGTACAGCTACAATG
GCGACAAGATTGGCCAGGGCAAAAACAACGTCGTGAAATTTCTCCAGGAAAATCCGACGATTGCCCAGGAAATGGAAAAA
CGGGTTCGGGGCGAGTTGCTGAATATTCCGGCAACGTCCGAGGAGAATGTGGAGGAGGAGAGCGAAGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

79.641

97.376

0.776
  recA Acinetobacter baylyi ADP1

73.392

99.708

0.732
  recA Acinetobacter baumannii D1279779

72.807

99.708

0.726
  recA Vibrio cholerae strain A1552

73.171

95.627

0.7
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.171

95.627

0.7
  recA Ralstonia pseudosolanacearum GMI1000

72.256

95.627

0.691
  recA Glaesserella parasuis strain SC1401

68.103

100

0.691
  recA Neisseria gonorrhoeae MS11

70.679

94.461

0.668
  recA Neisseria gonorrhoeae strain FA1090

70.679

94.461

0.668
  recA Neisseria gonorrhoeae MS11

70.679

94.461

0.668
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.667

95.335

0.636
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.614

95.918

0.601
  recA Helicobacter pylori strain NCTC11637

63.58

94.461

0.601
  recA Helicobacter pylori 26695

63.58

94.461

0.601
  recA Streptococcus mutans UA159

58.824

99.125

0.583
  recA Bacillus subtilis subsp. subtilis str. 168

61.682

93.586

0.577
  recA Latilactobacillus sakei subsp. sakei 23K

58.235

99.125

0.577
  recA Streptococcus pneumoniae Rx1

57.602

99.708

0.574
  recA Streptococcus pneumoniae D39

57.602

99.708

0.574
  recA Streptococcus pneumoniae R6

57.602

99.708

0.574
  recA Streptococcus pneumoniae TIGR4

57.602

99.708

0.574
  recA Streptococcus mitis NCTC 12261

58.769

94.752

0.557
  recA Streptococcus pyogenes NZ131

58.824

94.169

0.554
  recA Streptococcus mitis SK321

58.462

94.752

0.554
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.68

93.003

0.536
  recA Lactococcus lactis subsp. cremoris KW2

55.692

94.752

0.528