Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   OM794_RS03730 Genome accession   NZ_CP110535
Coordinates   779081..780151 (+) Length   356 a.a.
NCBI ID   WP_226250419.1    Uniprot ID   -
Organism   Halomonas sp. BDJS001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 774081..785151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OM794_RS03715 (OM794_03715) - 776708..777445 (+) 738 WP_226250421.1 type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein -
  OM794_RS03720 (OM794_03720) - 777442..778353 (+) 912 WP_226250420.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein -
  OM794_RS03725 (OM794_03725) - 778412..778945 (+) 534 WP_226250508.1 CinA family protein -
  OM794_RS03730 (OM794_03730) recA 779081..780151 (+) 1071 WP_226250419.1 recombinase RecA Machinery gene
  OM794_RS03735 (OM794_03735) - 780191..780655 (+) 465 WP_226250418.1 regulatory protein RecX -
  OM794_RS03740 (OM794_03740) alaS 780870..783481 (+) 2612 Protein_727 alanine--tRNA ligase -
  OM794_RS03745 (OM794_03745) - 783573..784823 (+) 1251 WP_088700649.1 aspartate kinase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 38267.78 Da        Isoelectric Point: 5.0387

>NTDB_id=755261 OM794_RS03730 WP_226250419.1 779081..780151(+) (recA) [Halomonas sp. BDJS001]
MAQDDNRTKALNAALTQIDRQFGKGTVMRLGDAPRVVMPSVSTGSLGLDIALGIGGLPFGRVCEIFGPESSGKTTLTLSV
IAQAQKQGKVCAFVDAEHALDPSYAEKLGVNLDDLLVSQPDTGEQALEITDMLVRSGGVDVIVIDSVAALTPRAEIEGEM
GDSHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRTGSVKVGDEVTG
NETRVKVVKNKVAPPFRQAEFQILYGKGIYHAGEVIDLGVQCNLVDKAGAWYSYKGKKIGQGKANSALYLEEHPEIMLEI
ETQIREQLLAKPDPKKEKEDAPAEAAELDAGDDDLL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=755261 OM794_RS03730 WP_226250419.1 779081..780151(+) (recA) [Halomonas sp. BDJS001]
ATGGCTCAGGATGACAACCGCACTAAAGCGCTAAACGCTGCACTCACCCAAATCGACCGTCAGTTCGGCAAGGGCACCGT
TATGCGTCTCGGCGACGCGCCGCGTGTCGTCATGCCGTCGGTTTCCACCGGATCATTGGGTCTGGATATCGCACTCGGCA
TCGGCGGCCTGCCGTTTGGCCGCGTGTGCGAAATCTTTGGCCCGGAGTCGTCGGGTAAAACCACCCTGACCCTCTCGGTG
ATTGCTCAGGCGCAAAAGCAGGGCAAAGTGTGTGCCTTCGTGGACGCCGAGCATGCCCTTGACCCCAGCTACGCCGAAAA
ATTGGGCGTTAACCTGGATGACCTGCTGGTTTCTCAGCCGGACACCGGCGAGCAAGCGCTGGAAATTACCGACATGCTGG
TTCGCTCCGGCGGTGTTGATGTGATTGTTATCGACTCCGTGGCTGCGTTAACCCCGCGCGCTGAAATCGAAGGCGAAATG
GGGGACTCCCACGTCGGGCTGCAGGCGCGTTTGATGTCTCAGGCGCTGCGTAAAATCACTGGTAATATCAAGAACGCCAA
CTGCCTGGTGATCTTCATCAACCAGATCCGCATGAAAATTGGTGTCATGTTTGGTAGCCCTGAAACCACCACGGGGGGTA
ACGCGCTGAAGTTCTACTCCAGCGTGCGTTTGGATATCCGCCGCACCGGGTCGGTAAAAGTGGGTGATGAAGTCACCGGT
AACGAAACCCGCGTGAAAGTAGTCAAAAACAAGGTGGCACCGCCATTCCGTCAGGCTGAATTCCAGATTCTTTACGGTAA
GGGTATCTACCACGCCGGTGAGGTCATTGATCTGGGCGTGCAGTGTAACCTCGTCGACAAAGCCGGTGCCTGGTACAGCT
ATAAAGGTAAGAAAATCGGTCAGGGTAAAGCCAATTCAGCGCTCTACCTGGAAGAGCACCCGGAAATTATGCTCGAAATC
GAAACGCAGATTCGTGAGCAGCTGTTGGCCAAGCCTGACCCTAAAAAGGAGAAGGAAGATGCGCCAGCCGAAGCAGCAGA
ATTGGACGCGGGCGATGACGATCTGCTCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

82.515

91.573

0.756
  recA Acinetobacter baylyi ADP1

73.043

96.91

0.708
  recA Acinetobacter baumannii D1279779

74.54

91.573

0.683
  recA Vibrio cholerae strain A1552

71.472

91.573

0.654
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.472

91.573

0.654
  recA Neisseria gonorrhoeae MS11

71.429

90.449

0.646
  recA Neisseria gonorrhoeae MS11

71.429

90.449

0.646
  recA Neisseria gonorrhoeae strain FA1090

71.429

90.449

0.646
  recA Glaesserella parasuis strain SC1401

68.997

92.416

0.638
  recA Ralstonia pseudosolanacearum GMI1000

71.746

88.483

0.635
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.031

91.573

0.596
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.128

94.663

0.579
  recA Helicobacter pylori 26695

62.614

92.416

0.579
  recA Helicobacter pylori strain NCTC11637

62.006

92.416

0.573
  recA Streptococcus pneumoniae R6

55.89

100

0.573
  recA Streptococcus pneumoniae TIGR4

55.89

100

0.573
  recA Streptococcus pneumoniae Rx1

55.89

100

0.573
  recA Streptococcus pneumoniae D39

55.89

100

0.573
  recA Bacillus subtilis subsp. subtilis str. 168

62.422

90.449

0.565
  recA Streptococcus mitis SK321

55.71

100

0.562
  recA Streptococcus mitis NCTC 12261

56.091

99.157

0.556
  recA Streptococcus mutans UA159

56.433

96.067

0.542
  recA Latilactobacillus sakei subsp. sakei 23K

58.462

91.292

0.534
  recA Streptococcus pyogenes NZ131

58.462

91.292

0.534
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.846

91.292

0.528
  recA Lactococcus lactis subsp. cremoris KW2

56.923

91.292

0.52