Detailed information NTG0754939

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QJP84_RS08560
• Genome accession: NZ_CP124351
• Coordinates: 1685671..1686663 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain AVS0362
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1680671..1691663

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QJP84_RS08540 (QJP84_08540)	ygbM	1681309..1682085 (+)	777	WP_001136914.1	HPr family phosphocarrier protein	-
QJP84_RS08545 (QJP84_08545)	ygbN	1682174..1683538 (+)	1365	WP_000104433.1	GntP family transporter	-
QJP84_RS08550 (QJP84_08550)	-	1683681..1684724 (-)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
QJP84_RS08555 (QJP84_08555)	-	1684949..1685500 (+)	552	WP_001179444.1	flavodoxin family protein	-
QJP84_RS08560 (QJP84_08560)	rpoS	1685671..1686663 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
QJP84_RS08565 (QJP84_08565)	nlpD	1686726..1687820 (-)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
QJP84_RS08570 (QJP84_08570)	pcm	1688005..1688631 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
QJP84_RS08575 (QJP84_08575)	surE	1688625..1689386 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QJP84_RS08580 (QJP84_08580)	truD	1689367..1690416 (-)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
QJP84_RS08585 (QJP84_08585)	ispF	1690413..1690892 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QJP84_RS08590 (QJP84_08590)	ispD	1690892..1691602 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=754939 QJP84_RS08560 WP_000081550.1 1685671..1686663(-) (rpoS) [Escherichia coli strain AVS0362]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=754939 QJP84_RS08560 WP_000081550.1 1685671..1686663(-) (rpoS) [Escherichia coli strain AVS0362]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715