Detailed information NTG0754874

Bioinformatically predicted

Overview

• Name: recA
• Type: Machinery gene
• Locus tag: LFL96_RS16195
• Genome accession: NZ_CP110395
• Coordinates: 3740458..3741537 (-)
• Length: 359 a.a.
• NCBI ID: WP_280996205.1
• Uniprot ID: -
• Organism: Paraburkholderia sp. D15
• Function: homologous recombination (predicted from homology) Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Prophage	3738690..3757454	3740458..3741537	within	0

Gene organization within MGE regions

Location: 3738690..3757454

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LFL96_RS16185 (LFL96_16190)	-	3738690..3739430 (-)	741	WP_280996203.1	DUF2889 domain-containing protein	-
LFL96_RS16190 (LFL96_16195)	recX	3739698..3740450 (-)	753	WP_280996204.1	recombination regulator RecX	-
LFL96_RS16195 (LFL96_16200)	recA	3740458..3741537 (-)	1080	WP_280996205.1	recombinase RecA	Machinery gene
LFL96_RS16200 (LFL96_16205)	-	3741767..3742567 (+)	801	WP_280996206.1	response regulator transcription factor	-
LFL96_RS16205 (LFL96_16210)	-	3742577..3744115 (+)	1539	WP_280996207.1	sensor histidine kinase	-
LFL96_RS16210 (LFL96_16215)	-	3744342..3746000 (+)	1659	WP_280996208.1	MFS transporter	-
LFL96_RS37075	-	3746267..3746374 (+)	108	Protein_3202	integrase	-
LFL96_RS16220 (LFL96_16225)	-	3746547..3746984 (+)	438	WP_280996209.1	hypothetical protein	-
LFL96_RS16225 (LFL96_16230)	-	3747271..3749487 (-)	2217	WP_280996210.1	alpha-ketoglutarate-dependent dioxygenase AlkB	-
LFL96_RS16230 (LFL96_16235)	-	3749493..3750599 (-)	1107	WP_280996211.1	AAA family ATPase	-
LFL96_RS16235 (LFL96_16240)	-	3750596..3751429 (-)	834	WP_280996212.1	hypothetical protein	-
LFL96_RS16240 (LFL96_16245)	-	3751865..3752413 (+)	549	WP_280996213.1	PAAR domain-containing protein	-
LFL96_RS16245 (LFL96_16250)	-	3752635..3753144 (+)	510	WP_280996214.1	VRR-NUC domain-containing protein	-
LFL96_RS16250 (LFL96_16255)	-	3753189..3754274 (+)	1086	WP_281000796.1	type VI immunity family protein	-
LFL96_RS16255 (LFL96_16260)	-	3754425..3755507 (+)	1083	WP_280996215.1	type VI immunity family protein	-
LFL96_RS16260 (LFL96_16265)	-	3755616..3756698 (-)	1083	WP_280996216.1	type VI immunity family protein	-
LFL96_RS16265 (LFL96_16270)	-	3756714..3757454 (-)	741	WP_280996217.1	VRR-NUC domain-containing protein	-

Sequence

Protein

• Length: 359 a.a.
• Molecular weight: 38242.72 Da
• Isoelectric Point: 4.8337

>NTDB_id=754874 LFL96_RS16195 WP_280996205.1 3740458..3741537(-) (recA) [Paraburkholderia sp. D15]
MEESKKGSAGLTAEKSKALAAALAQIEKQFGKGSVMRLGAGEVVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESS
GKTTLTLQVVAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVNELLVSQPDTGEQALEIADALVRSGSIDMIVIDSVAALV
PKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGS
IKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGISRQGEVIDLGVTAKIVDKAGAWYSYNGERIGQGKDNAREFLR
ENPEIAREIENRIRESLGVNAMAEAVTAGAGAEVADEEE

Nucleotide

• Length: 1080 bp

>NTDB_id=754874 LFL96_RS16195 WP_280996205.1 3740458..3741537(-) (recA) [Paraburkholderia sp. D15]
ATGGAAGAAAGCAAGAAAGGCTCGGCTGGACTGACTGCTGAAAAGAGCAAGGCACTCGCTGCCGCACTCGCGCAGATCGA
AAAGCAGTTCGGCAAAGGGTCGGTCATGCGGCTCGGCGCAGGTGAGGTAGTCGAAGACATCCAGGTGGTTTCAACCGGAT
CGCTCGGCCTCGACATCGCGCTGGGCGTCGGCGGTTTGCCGCGTGGCCGTGTGGTCGAAATTTATGGTCCGGAATCGTCG
GGTAAAACCACGCTGACGCTGCAAGTGGTCGCTGAAATGCAGAAGCTCGGCGGCACGGCAGCGTTTATCGACGCGGAACA
TGCGCTGGACATCCAGTACGCAGGCAAGCTCGGCGTGAACGTGAACGAGCTGCTGGTTTCGCAGCCGGACACCGGTGAAC
AGGCGCTTGAAATCGCGGACGCCCTGGTGCGTTCGGGCTCGATCGACATGATCGTGATCGACTCGGTCGCGGCACTCGTG
CCGAAGGCTGAAATCGAAGGCGAAATGGGCGACTCGCTGCCGGGTCTGCAAGCGCGTCTGATGTCGCAAGCACTGCGCAA
GCTGACCGGCACGATCAAGCGCACGAACTGCCTGGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCG
GCAACCCGGAAACCACCACGGGCGGCAACGCGCTGAAGTTCTACGCGTCGGTGCGTCTGGACATTCGCCGTATCGGTTCG
ATCAAGAAGAACGACGAAGTGATCGGCAACGAAACGCGCGTGAAGGTCGTCAAGAACAAGGTGTCGCCACCGTTCCGAGA
AGCGATCTTCGACATTCTTTACGGCGAGGGTATCTCGCGTCAGGGCGAAGTTATCGATCTGGGCGTCACGGCCAAGATCG
TCGACAAGGCCGGCGCCTGGTACAGCTACAACGGCGAACGTATCGGTCAGGGCAAGGACAATGCGCGTGAATTCCTGCGC
GAAAATCCGGAAATCGCTCGCGAGATCGAAAACCGCATCCGTGAATCGCTGGGTGTGAATGCCATGGCCGAAGCGGTAAC
CGCTGGTGCCGGCGCAGAAGTCGCGGACGAAGAAGAGTAA

Domains

Predicted by InterproScan.

• recA bacterial DNA recombination protein (RecA) (17-279)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recA	Ralstonia pseudosolanacearum GMI1000	85.014	96.657	0.822
recA	Neisseria gonorrhoeae MS11	71.182	96.657	0.688
recA	Neisseria gonorrhoeae strain FA1090	71.182	96.657	0.688
recA	Neisseria gonorrhoeae MS11	71.182	96.657	0.688
recA	Acinetobacter baumannii D1279779	70.725	96.1	0.68
recA	Acinetobacter baylyi ADP1	74.923	89.972	0.674
recA	Pseudomonas stutzeri DSM 10701	73.7	91.086	0.671
recA	Glaesserella parasuis strain SC1401	69.452	96.657	0.671
recA	Vibrio cholerae O1 biovar El Tor strain E7946	72.136	89.972	0.649
recA	Vibrio cholerae strain A1552	72.136	89.972	0.649
recA	Riemerella anatipestifer ATCC 11845 = DSM 15868	65.957	91.643	0.604
recA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	65.046	91.643	0.596
recA	Bacillus subtilis subsp. subtilis str. 168	64.939	91.365	0.593
recA	Helicobacter pylori 26695	64.329	91.365	0.588
recA	Helicobacter pylori strain NCTC11637	64.024	91.365	0.585
recA	Latilactobacillus sakei subsp. sakei 23K	61.934	92.201	0.571
recA	Streptococcus mutans UA159	62.121	91.922	0.571
recA	Streptococcus mitis NCTC 12261	60.714	93.593	0.568
recA	Streptococcus mitis SK321	60.417	93.593	0.565
recA	Streptococcus pneumoniae Rx1	60.417	93.593	0.565
recA	Streptococcus pneumoniae D39	60.417	93.593	0.565
recA	Streptococcus pneumoniae R6	60.417	93.593	0.565
recA	Streptococcus pneumoniae TIGR4	60.417	93.593	0.565
recA	Lactococcus lactis subsp. cremoris KW2	60.661	92.758	0.563
recA	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	62.928	89.415	0.563
recA	Streptococcus pyogenes NZ131	60.79	91.643	0.557