Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LJ360_RS07420 Genome accession   NZ_CP110342
Coordinates   1618951..1620003 (+) Length   350 a.a.
NCBI ID   WP_264995738.1    Uniprot ID   A0A9E7WCC3
Organism   Marinobacter sp. AN1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1613951..1625003
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJ360_RS07400 (LJ360_07400) - 1613990..1614934 (+) 945 WP_264995735.1 DegV family protein -
  LJ360_RS07405 (LJ360_07405) fdxA 1615029..1615352 (-) 324 WP_091849422.1 ferredoxin FdxA -
  LJ360_RS07410 (LJ360_07410) mutS 1615543..1618155 (-) 2613 WP_264995736.1 DNA mismatch repair protein MutS -
  LJ360_RS07415 (LJ360_07415) - 1618330..1618827 (+) 498 WP_264995737.1 CinA family protein -
  LJ360_RS07420 (LJ360_07420) recA 1618951..1620003 (+) 1053 WP_264995738.1 recombinase RecA Machinery gene
  LJ360_RS07425 (LJ360_07425) - 1620029..1620499 (+) 471 WP_264995739.1 flavodoxin family protein -
  LJ360_RS07430 (LJ360_07430) - 1620561..1620845 (-) 285 WP_264995740.1 hypothetical protein -
  LJ360_RS07435 (LJ360_07435) - 1621121..1623532 (+) 2412 WP_264995741.1 Lon protease family protein -
  LJ360_RS07440 (LJ360_07440) fixJ 1623629..1624255 (+) 627 WP_264995742.1 response regulator FixJ -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 37795.40 Da        Isoelectric Point: 5.1955

>NTDB_id=754131 LJ360_RS07420 WP_264995738.1 1618951..1620003(+) (recA) [Marinobacter sp. AN1]
MEDNRKKALNAALSQIERQFGKGAVMKMGDQPREAIPAVSTGSLGLDVALGIGGLPYGRIVEIYGPESSGKTTLTLQVVA
EAQKQGKTCAFVDAEHALDPIYAEKLGVNVDDLLVSQPDTGEQALEIADMLVRSNAVDVIIVDSVAALTPKAEIEGEMGD
SHVGLQARLMSQALRKLTGNVKHANCLMVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGSVKEGDEVVGNE
TRVKVVKNKVSPPFKQAEFQIMYGKGIYHMAEVLDMGVKEGFVDKSGAWYAYKGDKIGQGKANAAKFLEENPEVATEIET
AIREKLMPKPVPKEKAVAEATAEETNDELL

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=754131 LJ360_RS07420 WP_264995738.1 1618951..1620003(+) (recA) [Marinobacter sp. AN1]
ATGGAAGATAATCGCAAGAAAGCACTGAACGCCGCGCTAAGCCAGATTGAGCGCCAGTTTGGCAAGGGTGCCGTCATGAA
GATGGGCGATCAGCCCCGTGAAGCCATCCCGGCGGTTTCCACCGGCTCACTCGGGCTGGATGTAGCCCTGGGTATTGGTG
GTCTGCCGTATGGCCGGATTGTGGAAATCTATGGCCCGGAGAGCTCCGGTAAGACCACGCTGACCCTTCAGGTGGTCGCA
GAGGCCCAGAAGCAGGGCAAGACCTGTGCATTTGTCGACGCCGAGCATGCGCTGGACCCGATCTATGCGGAAAAGCTGGG
TGTTAACGTAGACGATTTGCTGGTCTCCCAGCCGGACACCGGTGAACAGGCCCTTGAAATTGCCGATATGCTGGTCCGCT
CTAATGCCGTTGACGTGATTATTGTCGACTCGGTAGCGGCACTGACGCCAAAGGCGGAAATCGAAGGCGAGATGGGCGAC
AGCCACGTTGGTTTGCAGGCCCGCCTTATGTCACAGGCACTGCGCAAGCTGACCGGTAACGTCAAGCACGCCAACTGTCT
GATGGTCTTCATCAACCAGATCCGCATGAAAATCGGCGTCATGTTTGGCAGTCCGGAAACCACCACCGGTGGTAATGCAC
TCAAGTTCTATTCTTCCGTCCGCCTGGATATCCGCCGCATCGGATCTGTAAAGGAAGGCGACGAAGTCGTGGGCAACGAG
ACCCGGGTGAAAGTCGTCAAGAACAAGGTGTCGCCGCCCTTCAAGCAGGCTGAATTCCAGATCATGTACGGCAAGGGCAT
TTACCATATGGCTGAAGTGCTGGATATGGGCGTGAAGGAAGGCTTCGTGGATAAGTCGGGCGCCTGGTATGCCTACAAGG
GTGACAAGATCGGTCAGGGCAAAGCTAATGCTGCCAAGTTCCTGGAAGAAAACCCTGAGGTGGCAACCGAGATTGAGACG
GCTATCCGTGAAAAGCTGATGCCCAAGCCGGTGCCCAAAGAGAAAGCGGTTGCCGAGGCAACGGCAGAAGAAACCAACGA
CGAACTGCTCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

82.569

93.429

0.771
  recA Acinetobacter baylyi ADP1

71.512

98.286

0.703
  recA Glaesserella parasuis strain SC1401

70.52

98.857

0.697
  recA Ralstonia pseudosolanacearum GMI1000

70.588

97.143

0.686
  recA Acinetobacter baumannii D1279779

73.089

93.429

0.683
  recA Neisseria gonorrhoeae MS11

68.195

99.714

0.68
  recA Neisseria gonorrhoeae MS11

68.195

99.714

0.68
  recA Neisseria gonorrhoeae strain FA1090

68.195

99.714

0.68
  recA Vibrio cholerae strain A1552

71.865

93.429

0.671
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.865

93.429

0.671
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.22

93.429

0.6
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.862

95.143

0.589
  recA Helicobacter pylori strain NCTC11637

60.237

96.286

0.58
  recA Helicobacter pylori 26695

60.237

96.286

0.58
  recA Bacillus subtilis subsp. subtilis str. 168

62.617

91.714

0.574
  recA Latilactobacillus sakei subsp. sakei 23K

59.76

95.143

0.569
  recA Streptococcus pyogenes NZ131

54.728

99.714

0.546
  recA Streptococcus pneumoniae Rx1

58.589

93.143

0.546
  recA Streptococcus pneumoniae D39

58.589

93.143

0.546
  recA Streptococcus pneumoniae R6

58.589

93.143

0.546
  recA Streptococcus pneumoniae TIGR4

58.589

93.143

0.546
  recA Streptococcus mutans UA159

58.769

92.857

0.546
  recA Streptococcus mitis SK321

58.824

92.286

0.543
  recA Streptococcus mitis NCTC 12261

58.514

92.286

0.54
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.333

92.571

0.54
  recA Lactococcus lactis subsp. cremoris KW2

57.585

92.286

0.531