Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LJ361_RS16465 Genome accession   NZ_CP110339
Coordinates   3481052..3482137 (-) Length   361 a.a.
NCBI ID   WP_010659933.1    Uniprot ID   -
Organism   Brucella sp. JSBI001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3476052..3487137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJ361_RS16445 (LJ361_16445) - 3476577..3477266 (-) 690 WP_010659937.1 ArsR/SmtB family transcription factor -
  LJ361_RS16450 (LJ361_16450) - 3477348..3477677 (+) 330 WP_010659936.1 NIPSNAP family protein -
  LJ361_RS16455 (LJ361_16455) - 3477674..3478024 (+) 351 WP_010659935.1 antibiotic biosynthesis monooxygenase family protein -
  LJ361_RS16460 (LJ361_16460) alaS 3478067..3480724 (-) 2658 WP_010659934.1 alanine--tRNA ligase -
  LJ361_RS16465 (LJ361_16465) recA 3481052..3482137 (-) 1086 WP_010659933.1 recombinase RecA Machinery gene
  LJ361_RS16470 (LJ361_16470) - 3482431..3483096 (-) 666 WP_010659932.1 OmpA family protein -
  LJ361_RS16475 (LJ361_16475) - 3483194..3483777 (-) 584 Protein_3244 transglycosylase SLT domain-containing protein -
  LJ361_RS16480 (LJ361_16480) - 3484028..3485335 (-) 1308 WP_010659930.1 replication-associated recombination protein A -
  LJ361_RS16485 (LJ361_16485) - 3485428..3486858 (-) 1431 WP_010659929.1 DegQ family serine endoprotease -

Sequence

Protein


Download         Length: 361 a.a.        Molecular weight: 38788.29 Da        Isoelectric Point: 4.9696

>NTDB_id=754113 LJ361_RS16465 WP_010659933.1 3481052..3482137(-) (recA) [Brucella sp. JSBI001]
MSQNSLRLVEENSVDKTKALDAALSQIERAFGKGSIMRLGKNAPVIEIETVPTGSLSLDIALGVGGLPKGRIVEIYGPES
SGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAAL
TPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIG
SIKERDEVVGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVSKTGELVDLGVKAGVVEKSGAWFSYNSQRLGQGRENAKQYL
KDNPEVAREIETTLRQNAGLIAEQFLEDGGPEDDASDAAEM

Nucleotide


Download         Length: 1086 bp        

>NTDB_id=754113 LJ361_RS16465 WP_010659933.1 3481052..3482137(-) (recA) [Brucella sp. JSBI001]
ATGTCTCAGAATTCATTGCGACTTGTTGAGGAAAATTCAGTGGACAAGACTAAGGCTCTCGATGCGGCATTGTCGCAAAT
CGAAAGGGCGTTCGGTAAGGGCTCGATCATGCGTCTGGGGAAAAATGCCCCGGTTATCGAGATCGAAACTGTTCCGACCG
GCTCGCTTTCTCTGGACATCGCGCTGGGTGTCGGCGGCTTGCCCAAAGGACGTATTGTTGAGATTTACGGACCGGAAAGC
TCCGGTAAGACGACACTCGCGCTGCACACGATTGCGGAAGCACAGAAGAAGGGCGGTATCTGTGCATTCGTCGATGCGGA
ACATGCGCTTGATCCTGTCTATGCACGCAAGCTGGGTGTCGATCTGGAAAACTTGCTGATTTCGCAGCCAGATACGGGTG
AGCAGGCACTTGAAATTACCGACACGCTTGTGCGTTCGGGCGCCATCGACGTTCTCGTCGTCGACTCCGTCGCAGCCTTG
ACGCCACGTGCGGAAATCGAAGGCGAAATGGGTGACTCCTTGCCTGGTCTTCAGGCTCGTCTCATGAGCCAGGCGCTGCG
CAAGCTTACTGCTTCGATCTCGCGGTCGAACTGTATGGTGATCTTCATCAACCAGATTCGTATGAAGATCGGTGTGATGT
TCGGTTCGCCGGAAACGACGACTGGCGGTAACGCTCTCAAGTTCTATGCTTCGGTTCGTCTCGATATTCGCCGTATCGGT
TCGATCAAGGAGCGCGACGAAGTTGTTGGTAACCAGACCCGCGTGAAGGTCGTCAAGAACAAGCTTGCGCCGCCCTTCAA
GCAGGTCGAATTCGACATCATGTACGGTGCTGGCGTTTCCAAGACCGGCGAGCTGGTCGATCTTGGCGTAAAGGCCGGTG
TCGTCGAGAAGTCCGGTGCGTGGTTCTCGTATAATTCCCAGCGACTGGGACAAGGCCGTGAAAACGCCAAGCAATATCTC
AAGGACAACCCGGAAGTGGCCCGCGAGATCGAAACCACGCTTCGTCAGAATGCCGGTTTGATTGCCGAACAGTTCCTCGA
AGATGGCGGACCAGAAGACGATGCGAGTGACGCTGCCGAAATGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(18-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

68.497

95.845

0.657
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.448

92.798

0.654
  recA Vibrio cholerae strain A1552

70.448

92.798

0.654
  recA Ralstonia pseudosolanacearum GMI1000

71.429

91.136

0.651
  recA Glaesserella parasuis strain SC1401

65.903

96.676

0.637
  recA Acinetobacter baumannii D1279779

71.429

89.197

0.637
  recA Pseudomonas stutzeri DSM 10701

70.405

88.92

0.626
  recA Neisseria gonorrhoeae MS11

69.659

89.474

0.623
  recA Neisseria gonorrhoeae MS11

69.659

89.474

0.623
  recA Neisseria gonorrhoeae strain FA1090

69.659

89.474

0.623
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.361

90.582

0.601
  recA Bacillus subtilis subsp. subtilis str. 168

65.337

90.305

0.59
  recA Helicobacter pylori 26695

64.724

90.305

0.584
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.526

90.582

0.584
  recA Helicobacter pylori strain NCTC11637

64.417

90.305

0.582
  recA Latilactobacillus sakei subsp. sakei 23K

62.577

90.305

0.565
  recA Streptococcus mitis SK321

61.631

91.69

0.565
  recA Streptococcus mitis NCTC 12261

61.329

91.69

0.562
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.813

88.643

0.557
  recA Streptococcus mutans UA159

59.467

93.629

0.557
  recA Streptococcus pneumoniae TIGR4

60.423

91.69

0.554
  recA Streptococcus pneumoniae D39

60.423

91.69

0.554
  recA Streptococcus pneumoniae Rx1

60.423

91.69

0.554
  recA Streptococcus pneumoniae R6

60.423

91.69

0.554
  recA Streptococcus pyogenes NZ131

60.486

91.136

0.551
  recA Lactococcus lactis subsp. cremoris KW2

57.988

93.629

0.543