Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   OM992_RS09040 Genome accession   NZ_CP110268
Coordinates   1711619..1712662 (+) Length   347 a.a.
NCBI ID   WP_016936063.1    Uniprot ID   A0AAE2NV59
Organism   Bacillus siamensis strain YB-1631     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1706619..1717662
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OM992_RS09010 (OM992_09010) ymfI 1706636..1707364 (+) 729 WP_095240826.1 elongation factor P 5-aminopentanone reductase -
  OM992_RS09015 (OM992_09015) - 1707440..1707697 (+) 258 WP_003154150.1 DUF3243 domain-containing protein -
  OM992_RS09020 (OM992_09020) - 1707827..1708618 (+) 792 WP_007409819.1 YmfK family protein -
  OM992_RS09025 (OM992_09025) - 1708637..1709524 (+) 888 WP_016936066.1 RodZ domain-containing protein -
  OM992_RS09030 (OM992_09030) pgsA 1709598..1710179 (+) 582 WP_016936065.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  OM992_RS09035 (OM992_09035) cinA 1710197..1711447 (+) 1251 WP_198698869.1 competence/damage-inducible protein A Machinery gene
  OM992_RS09040 (OM992_09040) recA 1711619..1712662 (+) 1044 WP_016936063.1 recombinase RecA Machinery gene
  OM992_RS09045 (OM992_09045) - 1712829..1714010 (+) 1182 WP_016936062.1 serine hydrolase -
  OM992_RS09050 (OM992_09050) rny 1714303..1715862 (+) 1560 WP_016936061.1 ribonuclease Y -
  OM992_RS09055 (OM992_09055) - 1715923..1716717 (+) 795 WP_264820145.1 TIGR00282 family metallophosphoesterase -
  OM992_RS09060 (OM992_09060) spoVS 1716917..1717177 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37993.14 Da        Isoelectric Point: 4.7528

>NTDB_id=753662 OM992_RS09040 WP_016936063.1 1711619..1712662(+) (recA) [Bacillus siamensis strain YB-1631]
MSDRQAALDMALKQIEKQFGKGSIMKLGEKTDTRISTVPSGSLALDTALGIGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQEKGGQAAFIDAEHALDPVYAQKLGVNIEELLLSQPDTGEQALEIAEALVRSGAVDIVVIDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDVMGNKT
RIKVVKNKVAPPFRTAEVDIMYGEGISKEGEIIDLGTELDIVQKSGSWYSYEEERLGQGRENAKQFLKENKDIMLMIQEQ
IREHYGLDNNGVTEKSEETQEELEFEE

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=753662 OM992_RS09040 WP_016936063.1 1711619..1712662(+) (recA) [Bacillus siamensis strain YB-1631]
ATGAGTGATCGTCAGGCAGCCTTAGATATGGCTCTTAAGCAAATAGAAAAACAATTCGGCAAAGGTTCCATCATGAAGCT
CGGGGAAAAAACGGATACAAGAATTTCAACGGTGCCGAGCGGCTCCCTTGCACTTGATACCGCTCTCGGAATAGGCGGAT
ACCCGCGCGGACGGATTATTGAAGTGTACGGACCTGAAAGCTCAGGTAAAACGACCGTAGCGCTTCACGCCATCGCTGAG
GTTCAGGAAAAAGGCGGACAGGCAGCATTTATTGATGCTGAGCATGCCCTTGATCCTGTTTATGCGCAAAAGCTCGGTGT
CAATATCGAAGAGCTGCTTCTGTCTCAGCCGGATACGGGAGAGCAGGCGCTGGAGATTGCTGAAGCGCTGGTGCGAAGCG
GAGCTGTTGATATCGTAGTCATTGACTCTGTTGCGGCGCTTGTTCCAAAAGCTGAAATTGAAGGTGACATGGGTGACTCA
CACGTCGGTTTACAGGCGCGTCTCATGTCTCAGGCGCTCCGTAAGCTTTCCGGGGCCATCAATAAATCTAAAACAATCGC
AATCTTTATTAACCAGATTCGTGAAAAAGTCGGCGTTATGTTCGGAAATCCGGAGACGACACCGGGCGGACGCGCGCTGA
AATTCTATTCTTCCGTGCGTCTTGAAGTGCGCCGTGCTGAGCAATTAAAGCAGGGCAACGACGTGATGGGGAATAAAACG
AGAATTAAAGTCGTAAAAAACAAAGTCGCTCCTCCGTTCCGTACGGCTGAAGTGGACATCATGTACGGTGAAGGAATCTC
CAAAGAAGGGGAAATCATCGACCTTGGAACTGAACTTGATATCGTGCAAAAAAGCGGCTCGTGGTATTCTTATGAAGAAG
AACGCCTCGGACAGGGCCGTGAAAATGCCAAGCAGTTCTTAAAAGAAAATAAAGACATCATGCTGATGATTCAAGAACAA
ATCCGTGAACATTACGGTTTGGACAATAACGGTGTTACGGAAAAATCGGAAGAAACTCAGGAAGAGCTTGAATTTGAAGA
ATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

97.414

100

0.977
  recA Latilactobacillus sakei subsp. sakei 23K

72.941

97.983

0.715
  recA Streptococcus pneumoniae Rx1

66.185

99.712

0.66
  recA Streptococcus pneumoniae D39

66.185

99.712

0.66
  recA Streptococcus pneumoniae R6

66.185

99.712

0.66
  recA Streptococcus pneumoniae TIGR4

66.185

99.712

0.66
  recA Streptococcus mutans UA159

65.698

99.135

0.651
  recA Streptococcus mitis NCTC 12261

68.182

95.101

0.648
  recA Streptococcus mitis SK321

67.879

95.101

0.646
  recA Streptococcus pyogenes NZ131

67.073

94.524

0.634
  recA Neisseria gonorrhoeae strain FA1090

63.188

99.424

0.628
  recA Neisseria gonorrhoeae MS11

63.188

99.424

0.628
  recA Neisseria gonorrhoeae MS11

63.188

99.424

0.628
  recA Lactococcus lactis subsp. cremoris KW2

65.758

95.101

0.625
  recA Helicobacter pylori strain NCTC11637

62.682

98.847

0.62
  recA Helicobacter pylori 26695

62.682

98.847

0.62
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.877

98.271

0.608
  recA Ralstonia pseudosolanacearum GMI1000

64.329

94.524

0.608
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.303

94.236

0.597
  recA Glaesserella parasuis strain SC1401

59.71

99.424

0.594
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.863

92.507

0.591
  recA Vibrio cholerae strain A1552

63.863

92.507

0.591
  recA Acinetobacter baylyi ADP1

59.42

99.424

0.591
  recA Acinetobacter baumannii D1279779

59.13

99.424

0.588
  recA Pseudomonas stutzeri DSM 10701

62.813

92.219

0.579
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.062

93.084

0.559