Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   OL234_RS00510 Genome accession   NZ_CP110232
Coordinates   88671..89726 (+) Length   351 a.a.
NCBI ID   WP_275469227.1    Uniprot ID   A0AAF0CV47
Organism   Vagococcus intermedius strain STAA11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 83671..94726
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OL234_RS00490 (OL234_00490) - 84265..85560 (+) 1296 WP_275469223.1 pitrilysin family protein -
  OL234_RS00495 (OL234_00495) - 85713..86567 (+) 855 WP_275469224.1 helix-turn-helix domain-containing protein -
  OL234_RS00500 (OL234_00500) pgsA 86618..87196 (+) 579 WP_275469225.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  OL234_RS00505 (OL234_00505) cinA 87318..88571 (+) 1254 WP_275469226.1 competence/damage-inducible protein A Machinery gene
  OL234_RS00510 (OL234_00510) recA 88671..89726 (+) 1056 WP_275469227.1 recombinase RecA Machinery gene
  OL234_RS00515 (OL234_00515) rny 89989..91545 (+) 1557 WP_275469228.1 ribonuclease Y -
  OL234_RS00520 (OL234_00520) - 91682..92482 (+) 801 WP_275469229.1 TIGR00282 family metallophosphoesterase -
  OL234_RS00525 (OL234_00525) - 92503..92937 (+) 435 WP_275469230.1 YlbF family regulator -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 38194.53 Da        Isoelectric Point: 5.2462

>NTDB_id=753280 OL234_RS00510 WP_275469227.1 88671..89726(+) (recA) [Vagococcus intermedius strain STAA11]
MADDRKVALDAALKKIEKNFGKGSIMKLGEKVDTQISTIPSGSLALDVALGVGGYPRGRIVEVYGPESSGKTTVALHAIA
EVQKQGGTAAFIDAEHALDPKYAQNLGVNIDELLLSQPDTGEQGLEIADALVSSGAIDIVVVDSVAALVPRAEIDGEMGD
SHVGLQARLMSQALRKLSGSINKTKTIALFINQIREKVGVMFGNPEITPGGRALKFYATVRLEVRRAEQLKNGTDIIGNR
TKIKVVKNKVAPPFRIAEVDLMYGEGISKAGELLDMASEQDIVDKSGSWYSYKEERIGQGRENAKKYMLDHPEMYEEIEK
RVRQAYGIGSEEYIEETSKEAEKKAEKKAEE

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=753280 OL234_RS00510 WP_275469227.1 88671..89726(+) (recA) [Vagococcus intermedius strain STAA11]
ATGGCAGATGATCGTAAAGTAGCATTAGATGCTGCGTTAAAAAAAATAGAAAAGAACTTTGGGAAAGGTTCAATTATGAA
ATTGGGTGAAAAAGTTGATACCCAAATATCAACAATTCCTAGTGGTTCTTTGGCATTGGATGTGGCTTTAGGCGTAGGTG
GTTATCCACGTGGGCGTATTGTTGAAGTCTATGGTCCTGAAAGTTCAGGTAAAACAACGGTTGCGCTACACGCGATAGCT
GAAGTTCAAAAACAGGGTGGAACAGCGGCTTTTATTGATGCAGAGCATGCTTTAGACCCAAAATATGCCCAAAATTTAGG
GGTTAATATTGATGAGTTATTATTATCACAACCAGATACAGGAGAGCAAGGCTTAGAAATTGCTGATGCTTTAGTTTCAA
GTGGTGCCATTGATATCGTAGTAGTCGATTCAGTAGCTGCCTTAGTGCCCCGTGCTGAGATTGATGGTGAGATGGGAGAT
TCCCATGTTGGTTTGCAAGCACGACTAATGTCTCAAGCCTTACGTAAACTATCTGGCTCAATCAATAAAACAAAGACTAT
AGCATTGTTTATTAACCAAATCCGTGAAAAAGTTGGCGTTATGTTTGGTAATCCCGAAATTACCCCAGGTGGACGTGCAC
TTAAATTTTATGCAACGGTTCGTTTAGAAGTACGCCGTGCAGAGCAGTTAAAAAATGGTACGGATATTATCGGTAACAGA
ACTAAAATTAAAGTTGTGAAAAATAAAGTAGCACCGCCATTTAGAATTGCTGAAGTTGATTTAATGTACGGAGAAGGTAT
TTCTAAAGCTGGTGAATTACTAGATATGGCATCTGAACAAGACATCGTGGATAAGAGTGGGTCATGGTACTCTTATAAAG
AGGAGAGAATCGGTCAAGGTCGTGAAAATGCGAAGAAATATATGTTAGATCATCCAGAGATGTATGAAGAAATTGAAAAA
CGAGTAAGACAAGCTTACGGTATTGGTTCTGAGGAATATATTGAAGAAACAAGTAAAGAAGCTGAAAAAAAAGCTGAAAA
AAAAGCTGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

83.129

92.877

0.772
  recA Bacillus subtilis subsp. subtilis str. 168

80

92.593

0.741
  recA Streptococcus pneumoniae R6

69.231

100

0.692
  recA Streptococcus pneumoniae TIGR4

69.231

100

0.692
  recA Streptococcus pneumoniae D39

69.231

100

0.692
  recA Streptococcus pneumoniae Rx1

69.231

100

0.692
  recA Streptococcus mitis NCTC 12261

68.466

100

0.687
  recA Streptococcus mutans UA159

67.135

100

0.681
  recA Streptococcus mitis SK321

69.795

97.151

0.678
  recA Streptococcus pyogenes NZ131

70.091

94.302

0.661
  recA Lactococcus lactis subsp. cremoris KW2

67.477

93.732

0.632
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.634

93.447

0.604
  recA Neisseria gonorrhoeae MS11

60.997

97.151

0.593
  recA Neisseria gonorrhoeae MS11

60.997

97.151

0.593
  recA Neisseria gonorrhoeae strain FA1090

60.997

97.151

0.593
  recA Glaesserella parasuis strain SC1401

58.974

100

0.59
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.006

93.732

0.581
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.515

94.017

0.578
  recA Vibrio cholerae strain A1552

58.43

98.006

0.573
  recA Vibrio cholerae O1 biovar El Tor strain E7946

58.43

98.006

0.573
  recA Acinetobacter baylyi ADP1

61.42

92.308

0.567
  recA Helicobacter pylori 26695

59.459

94.872

0.564
  recA Helicobacter pylori strain NCTC11637

59.459

94.872

0.564
  recA Ralstonia pseudosolanacearum GMI1000

62.939

89.174

0.561
  recA Acinetobacter baumannii D1279779

60.494

92.308

0.558
  recA Pseudomonas stutzeri DSM 10701

60.681

92.023

0.558