Detailed information    

insolico Bioinformatically predicted

Overview


Name   recA   Type   Machinery gene
Locus tag   GOZ47_RS08225 Genome accession   NZ_AP021885
Coordinates   1849636..1850724 (-) Length   362 a.a.
NCBI ID   WP_013773216.1    Uniprot ID   -
Organism   Melissococcus plutonius strain DAT1033     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 1844636..1855724
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOZ47_RS08210 (DAT1033_1663) - 1845928..1846299 (-) 372 WP_013773219.1 RicAFT regulatory complex protein RicA family protein -
  GOZ47_RS08215 (DAT1033_1664) - 1846448..1847227 (-) 780 WP_013773218.1 TIGR00282 family metallophosphoesterase -
  GOZ47_RS08220 (DAT1033_1665) rny 1847712..1849268 (-) 1557 WP_013773217.1 ribonuclease Y -
  GOZ47_RS08225 (DAT1033_1666) recA 1849636..1850724 (-) 1089 WP_013773216.1 recombinase RecA Machinery gene
  GOZ47_RS08230 (DAT1033_1667) cinA 1850839..1852083 (-) 1245 WP_013773215.1 competence/damage-inducible protein A Machinery gene
  GOZ47_RS08235 (DAT1033_1668) - 1852284..1853525 (-) 1242 WP_048589639.1 peptidase U32 family protein -
  GOZ47_RS08240 (DAT1033_1669) - 1853541..1854461 (-) 921 WP_013773213.1 peptidase U32 family protein -

Sequence


Protein


Download         Length: 362 a.a.        Molecular weight: 39017.26 Da        Isoelectric Point: 4.7897

>NTDB_id=75312 GOZ47_RS08225 WP_013773216.1 1849636..1850724(-) (recA) [Melissococcus plutonius strain DAT1033]
MADDRKTALDAALKKIEKNFGKGSIMKLGEKADQQVATVPSGSLALDVALGVGGYPRGRIVEIYGPESSGKTTVSLNAIA
EIQKQGGTAAFIDAEHALDPQYAQKLGVNIDELLLSQPDTGEQGLEIADALVSSGAIDIVVVDSVAALVPRAEIDGEMGA
SHVGLQARLMSQALRKLSGSISKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYATVRLEVRRAEQLKQGTDIVGNR
TKIKVVKNKVAPPFKVAEVDIMYGQGISQEGELLDMAVEQDIIDKSGAWYSYNEERIGQGRENVKNYMIEHPEMVEEISK
KVRKAFGIETDADTDASTKTNKEETGNITDKTDAQEALPLDE

Nucleotide


Download         Length: 1089 bp        

>NTDB_id=75312 GOZ47_RS08225 WP_013773216.1 1849636..1850724(-) (recA) [Melissococcus plutonius strain DAT1033]
TTGGCAGATGATCGCAAAACAGCTTTAGATGCTGCATTAAAAAAAATTGAAAAGAACTTTGGTAAGGGTTCTATTATGAA
ATTAGGAGAGAAGGCTGATCAGCAAGTTGCTACTGTTCCTAGTGGCTCTTTAGCTTTGGATGTAGCTTTAGGTGTTGGTG
GCTATCCTAGAGGAAGAATCGTTGAAATCTACGGACCTGAAAGTTCTGGTAAGACAACCGTCTCTCTTAATGCTATCGCT
GAAATACAAAAACAAGGTGGAACTGCTGCCTTTATTGATGCTGAACATGCTCTTGATCCACAATATGCCCAAAAATTAGG
TGTTAATATTGATGAATTATTACTATCACAGCCAGATACTGGAGAGCAAGGCTTAGAAATTGCGGATGCTTTGGTATCTA
GTGGTGCAATTGACATAGTTGTCGTTGACTCTGTGGCTGCACTTGTCCCACGTGCTGAAATTGATGGAGAAATGGGCGCC
AGTCATGTAGGATTGCAAGCTAGATTAATGTCACAAGCACTACGTAAACTCTCCGGTTCAATTAGTAAAACAAAAACAAT
TGCTATTTTTATTAACCAAATTCGCGAGAAGGTAGGCGTAATGTTTGGGAATCCAGAAACAACACCTGGCGGTCGTGCGT
TAAAATTTTATGCAACAGTTCGTTTGGAAGTACGTCGTGCTGAACAATTAAAACAAGGAACTGATATTGTCGGTAATCGT
ACAAAGATTAAAGTGGTTAAAAACAAGGTAGCTCCACCATTTAAAGTAGCTGAAGTAGATATTATGTATGGCCAAGGAAT
TTCACAAGAAGGTGAACTTTTAGATATGGCTGTCGAACAAGATATTATTGATAAAAGTGGCGCATGGTATAGTTACAATG
AAGAACGAATTGGTCAAGGAAGAGAAAATGTTAAGAATTATATGATAGAACATCCTGAGATGGTGGAAGAAATTTCTAAA
AAGGTGCGTAAGGCCTTTGGTATTGAGACAGATGCAGATACAGATGCTTCAACCAAAACAAATAAAGAAGAAACAGGCAA
TATTACGGATAAAACAGATGCACAAGAAGCTCTCCCATTGGATGAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

78.592

94.199

0.74

  recA Bacillus subtilis subsp. subtilis str. 168

76.829

90.608

0.696

  recA Streptococcus pneumoniae D39

67.76

100

0.685

  recA Streptococcus pneumoniae R6

67.76

100

0.685

  recA Streptococcus pneumoniae Rx1

67.76

100

0.685

  recA Streptococcus pneumoniae TIGR4

67.76

100

0.685

  recA Streptococcus mutans UA159

65.574

100

0.663

  recA Streptococcus pyogenes NZ131

68.182

97.238

0.663

  recA Streptococcus mitis SK321

68.481

96.409

0.66

  recA Streptococcus mitis NCTC 12261

71.733

90.884

0.652

  recA Lactococcus lactis subsp. cremoris KW2

68.955

92.541

0.638

  recA Neisseria gonorrhoeae strain FA1090

62.791

95.028

0.597

  recA Neisseria gonorrhoeae MS11

62.791

95.028

0.597

  recA Neisseria gonorrhoeae MS11

62.791

95.028

0.597

  recA Acinetobacter baylyi ADP1

61.808

94.751

0.586

  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.939

91.16

0.583

  recA Acinetobacter baumannii D1279779

64.11

90.055

0.577

  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.804

90.055

0.575

  recA Ralstonia pseudosolanacearum GMI1000

66.134

86.464

0.572

  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.883

90.055

0.566

  recA Vibrio cholerae strain A1552

62.883

90.055

0.566

  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.212

91.16

0.558

  recA Glaesserella parasuis strain SC1401

58.892

94.751

0.558

  recA Pseudomonas stutzeri DSM 10701

59.644

93.094

0.555

  recA Helicobacter pylori strain NCTC11637

59.816

90.055

0.539

  recA Helicobacter pylori 26695

59.816

90.055

0.539


Multiple sequence alignment