Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   GZH91_RS04015 Genome accession   NZ_AP021884
Coordinates   751883..752905 (-) Length   340 a.a.
NCBI ID   WP_147074510.1    Uniprot ID   A0A512LAN5
Organism   Sulfuriferula plumbiphila strain Gro7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 746883..757905
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GZH91_RS03990 (SFPGR_07890) - 746994..747551 (-) 558 WP_147074515.1 RNA polymerase sigma factor -
  GZH91_RS03995 (SFPGR_07900) - 748063..749085 (-) 1023 WP_147074514.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  GZH91_RS04000 (SFPGR_07910) - 749082..749834 (-) 753 WP_147074513.1 DUF2334 domain-containing protein -
  GZH91_RS04005 (SFPGR_07920) - 749827..750942 (-) 1116 WP_147074512.1 glycosyltransferase family 1 protein -
  GZH91_RS04010 (SFPGR_07930) recX 751352..751798 (-) 447 WP_147074511.1 recombination regulator RecX -
  GZH91_RS04015 (SFPGR_07940) recA 751883..752905 (-) 1023 WP_147074510.1 recombinase RecA Machinery gene
  GZH91_RS04020 (SFPGR_07950) - 752982..753476 (-) 495 WP_147074509.1 CinA family protein -
  GZH91_RS04025 (SFPGR_07960) - 753473..753961 (-) 489 WP_147074508.1 phosphatidylglycerophosphatase A -
  GZH91_RS04030 (SFPGR_07970) thiL 753942..754901 (-) 960 WP_147074507.1 thiamine-phosphate kinase -
  GZH91_RS04035 (SFPGR_07980) nusB 754950..755387 (-) 438 WP_147074506.1 transcription antitermination factor NusB -
  GZH91_RS04040 (SFPGR_07990) ribH 755384..755851 (-) 468 WP_147074505.1 6,7-dimethyl-8-ribityllumazine synthase -
  GZH91_RS04045 (SFPGR_08000) ribBA 755912..757003 (-) 1092 WP_147074504.1 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II -
  GZH91_RS04050 (SFPGR_08010) - 757000..757596 (-) 597 WP_147074503.1 riboflavin synthase -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 36420.77 Da        Isoelectric Point: 5.7767

>NTDB_id=75263 GZH91_RS04015 WP_147074510.1 751883..752905(-) (recA) [Sulfuriferula plumbiphila strain Gro7]
MDENRSKALAAALAQIEKSFGKGSIMRLGDGEVVRDIQVVSTGSLGLDIALGVGGLPRGRVVEIFGPESSGKTTLTLQVI
AEMQKLGGTAAFIDAEHALDPQYAQKLGVNVSDLLISQPDTGEQALEIADMLVRSGSVDVVVIDSVAALTPKAEIEGEMG
DSHMGLQARLMSQALRKLTGNIKRTNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKKGDEVIGS
ETRVKVVKNKVAPPFKQAEFDILYGEGISREGEIIELGVEHKLVEKSGAWYAYNGEKIGQGKDNAREYLREHPEVAHEIE
NKVRAAIGVAPMAVTAEVGA

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=75263 GZH91_RS04015 WP_147074510.1 751883..752905(-) (recA) [Sulfuriferula plumbiphila strain Gro7]
ATGGACGAAAACAGAAGCAAAGCCCTCGCCGCCGCCCTGGCACAAATCGAAAAAAGCTTCGGCAAAGGTTCCATCATGCG
CCTCGGCGATGGCGAAGTCGTGCGCGATATTCAGGTGGTCTCCACCGGCTCCCTGGGCTTAGATATTGCGCTGGGCGTCG
GCGGTTTGCCGCGCGGCCGCGTGGTTGAAATCTTCGGTCCGGAATCCTCCGGCAAAACCACGCTCACCCTGCAGGTCATC
GCCGAAATGCAGAAACTGGGCGGCACCGCAGCGTTCATTGATGCCGAGCACGCGCTCGACCCGCAATACGCACAAAAACT
CGGGGTGAATGTCTCCGACCTGCTCATCTCGCAGCCCGACACCGGTGAGCAGGCGCTGGAAATTGCCGACATGCTGGTGC
GCTCCGGCTCGGTGGACGTGGTGGTGATAGACTCGGTGGCGGCGTTGACTCCCAAGGCCGAAATCGAAGGCGAAATGGGC
GACTCGCACATGGGCCTGCAAGCCCGCCTGATGAGCCAGGCGTTGCGCAAGCTCACCGGCAACATCAAGCGCACCAATAC
CCTGGTGATCTTCATCAACCAGATCCGCATGAAAATCGGCGTCATGTTCGGCAACCCGGAGACCACCACCGGCGGCAATG
CACTCAAATTCTACGCCTCGGTGCGCCTCGACATCCGCCGCACCGGCGCAATCAAGAAAGGCGACGAAGTGATCGGCTCC
GAGACTCGCGTCAAGGTCGTCAAGAACAAGGTCGCGCCGCCATTCAAGCAGGCTGAATTCGATATCCTTTACGGCGAAGG
CATCTCGCGCGAGGGGGAAATCATCGAGCTCGGCGTGGAGCACAAACTGGTGGAAAAATCCGGCGCCTGGTATGCCTATA
ACGGCGAAAAAATCGGCCAGGGCAAAGACAACGCGCGCGAATACCTGCGCGAGCACCCCGAGGTCGCCCACGAGATTGAA
AATAAAGTGCGCGCGGCGATTGGTGTCGCACCGATGGCCGTTACGGCAGAAGTCGGCGCGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A512LAN5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

83.178

94.412

0.785
  recA Pseudomonas stutzeri DSM 10701

77.37

96.176

0.744
  recA Neisseria gonorrhoeae MS11

74.772

96.765

0.724
  recA Neisseria gonorrhoeae MS11

74.772

96.765

0.724
  recA Neisseria gonorrhoeae strain FA1090

74.772

96.765

0.724
  recA Vibrio cholerae strain A1552

75.617

95.294

0.721
  recA Vibrio cholerae O1 biovar El Tor strain E7946

75.617

95.294

0.721
  recA Glaesserella parasuis strain SC1401

71.687

97.647

0.7
  recA Acinetobacter baylyi ADP1

73.148

95.294

0.697
  recA Acinetobacter baumannii D1279779

72.84

95.294

0.694
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.159

96.471

0.638
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.609

99.412

0.632
  recA Bacillus subtilis subsp. subtilis str. 168

65.644

95.882

0.629
  recA Latilactobacillus sakei subsp. sakei 23K

64.939

96.471

0.626
  recA Lactococcus lactis subsp. cremoris KW2

64.134

96.765

0.621
  recA Helicobacter pylori strain NCTC11637

63.526

96.765

0.615
  recA Helicobacter pylori 26695

63.222

96.765

0.612
  recA Streptococcus pneumoniae TIGR4

62.614

96.765

0.606
  recA Streptococcus pneumoniae Rx1

62.614

96.765

0.606
  recA Streptococcus pneumoniae D39

62.614

96.765

0.606
  recA Streptococcus pneumoniae R6

62.614

96.765

0.606
  recA Streptococcus pyogenes NZ131

62.424

97.059

0.606
  recA Streptococcus mitis SK321

62.006

96.765

0.6
  recA Streptococcus mitis NCTC 12261

61.702

96.765

0.597
  recA Streptococcus mutans UA159

61.329

97.353

0.597
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.656

95.882

0.591

Multiple sequence alignment