Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | OH720_RS05700 | Genome accession | NZ_CP110128 |
| Coordinates | 1269276..1270334 (+) | Length | 352 a.a. |
| NCBI ID | WP_008060630.1 | Uniprot ID | J3IHS3 |
| Organism | Pseudomonas sp. WJP1 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1254694..1274873 | 1269276..1270334 | within | 0 |
Gene organization within MGE regions
Location: 1254694..1274873
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OH720_RS05625 (OH720_05625) | - | 1254694..1255590 (-) | 897 | WP_180203248.1 | LysR substrate-binding domain-containing protein | - |
| OH720_RS05630 (OH720_05630) | - | 1255698..1256810 (+) | 1113 | WP_272604846.1 | S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | - |
| OH720_RS05635 (OH720_05635) | fghA | 1256819..1257664 (+) | 846 | WP_272604847.1 | S-formylglutathione hydrolase | - |
| OH720_RS05640 (OH720_05640) | ispF | 1257708..1258181 (+) | 474 | WP_272604848.1 | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | - |
| OH720_RS05645 (OH720_05645) | truD | 1258178..1259236 (+) | 1059 | WP_272604849.1 | tRNA pseudouridine(13) synthase TruD | - |
| OH720_RS05650 (OH720_05650) | surE | 1259224..1259976 (+) | 753 | WP_008057342.1 | 5'/3'-nucleotidase SurE | - |
| OH720_RS05655 (OH720_05655) | - | 1260015..1260650 (+) | 636 | WP_177325071.1 | protein-L-isoaspartate(D-aspartate) O-methyltransferase | - |
| OH720_RS05660 (OH720_05660) | - | 1260862..1261719 (+) | 858 | WP_272604850.1 | peptidoglycan DD-metalloendopeptidase family protein | - |
| OH720_RS05665 (OH720_05665) | rpoS | 1261824..1262831 (+) | 1008 | WP_008057345.1 | RNA polymerase sigma factor RpoS | - |
| OH720_RS05670 (OH720_05670) | fdxA | 1263328..1263651 (-) | 324 | WP_272604851.1 | ferredoxin FdxA | - |
| OH720_RS05675 (OH720_05675) | mutS | 1263794..1266373 (-) | 2580 | WP_272604852.1 | DNA mismatch repair protein MutS | - |
| OH720_RS05680 (OH720_05680) | - | 1266576..1267310 (+) | 735 | WP_272606404.1 | XRE family transcriptional regulator | - |
| OH720_RS05685 (OH720_05685) | - | 1267445..1267795 (+) | 351 | WP_272604853.1 | phage holin family protein | - |
| OH720_RS05690 (OH720_05690) | - | 1267993..1268556 (+) | 564 | WP_272604854.1 | glycoside hydrolase family 19 protein | - |
| OH720_RS05695 (OH720_05695) | - | 1268692..1269192 (+) | 501 | WP_272604855.1 | CinA family protein | - |
| OH720_RS05700 (OH720_05700) | recA | 1269276..1270334 (+) | 1059 | WP_008060630.1 | recombinase RecA | Machinery gene |
| OH720_RS05705 (OH720_05705) | recX | 1270343..1270810 (+) | 468 | WP_008060631.1 | recombination regulator RecX | - |
| OH720_RS05710 (OH720_05710) | - | 1270855..1271973 (-) | 1119 | WP_272604856.1 | TIGR00730 family Rossman fold protein | - |
| OH720_RS05715 (OH720_05715) | - | 1272450..1272644 (+) | 195 | WP_272604857.1 | hypothetical protein | - |
| OH720_RS05720 (OH720_05720) | - | 1272646..1273068 (-) | 423 | WP_008060643.1 | PA3611 family quorum-sensing-regulated virulence factor | - |
| OH720_RS05725 (OH720_05725) | - | 1273259..1274002 (+) | 744 | WP_272604858.1 | tRNA-uridine aminocarboxypropyltransferase | - |
| OH720_RS05730 (OH720_05730) | erdR | 1274223..1274873 (+) | 651 | WP_180203233.1 | response regulator transcription factor ErdR | - |
Sequence
Protein
Download Length: 352 a.a. Molecular weight: 37379.81 Da Isoelectric Point: 5.2957
>NTDB_id=752531 OH720_RS05700 WP_008060630.1 1269276..1270334(+) (recA) [Pseudomonas sp. WJP1]
MDDNKKKALAAALGQIERQFGKGAVMRMGDQDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVASPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYNGTKIGQGKANSAKYLADNPDIAATLEK
QLRDKLLSPASVADAKASAVKETEDDLADADI
MDDNKKKALAAALGQIERQFGKGAVMRMGDQDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVASPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYNGTKIGQGKANSAKYLADNPDIAATLEK
QLRDKLLSPASVADAKASAVKETEDDLADADI
Nucleotide
Download Length: 1059 bp
>NTDB_id=752531 OH720_RS05700 WP_008060630.1 1269276..1270334(+) (recA) [Pseudomonas sp. WJP1]
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCAGGACCGTCAGGCGATCCCGGCCATCTCTACTGGCTCTCTGGGTCTTGACATCGCTTTGGGCATTGGCG
GTCTGCCAAAAGGCCGTATTGTTGAAATCTACGGTCCTGAATCTTCCGGTAAAACCACACTGACATTGTCCGTGATCGCC
CAGGCTCAGAAAGCCGGCGCGACCTGCGCATTCGTCGATGCCGAGCACGCCCTGGACCCTGAGTACGCCGGCAAGCTGGG
CGTCAACGTCGACGACCTGCTGGTGTCCCAGCCTGACACCGGTGAGCAAGCCCTGGAAATCACCGACATGCTGGTGCGTT
CCAATGCGGTCGACGTGATCATCGTCGACTCCGTGGCGGCGCTGGTGCCGAAAGCTGAAATCGAAGGCGAAATGGGTGAC
ATGCACGTGGGCCTGCAGGCTCGTCTGATGTCCCAGGCACTGCGTAAAATCACCGGTAATATCAAGAACGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGTATGAAAATCGGCGTGATGTTCGGTAGTCCGGAAACGACTACCGGTGGTAACGCGC
TGAAGTTCTATGCGTCGGTTCGTCTGGATATCCGCCGCACGGGTGCGGTGAAAGAAGGTGATGAAGTCGTCGGTAGCGAG
ACCCGCGTCAAGGTTGTAAAGAACAAGGTGGCTTCGCCGTTCCGTCAGGCCGAGTTCCAGATTCTTTACGGCAAGGGCAT
CTACCTCAATGGCGAGATGATCGACCTGGGTGTTCTGCACGGTTTCGTTGAGAAGTCCGGTGCCTGGTATGCCTATAACG
GCACCAAGATCGGTCAGGGTAAGGCCAACTCGGCCAAATACCTGGCGGATAACCCGGATATTGCCGCAACGCTCGAGAAA
CAACTGCGTGACAAACTGCTGTCTCCGGCTTCGGTAGCGGATGCCAAGGCTTCTGCGGTCAAAGAGACCGAAGACGATCT
GGCTGACGCTGATATCTGA
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCAGGACCGTCAGGCGATCCCGGCCATCTCTACTGGCTCTCTGGGTCTTGACATCGCTTTGGGCATTGGCG
GTCTGCCAAAAGGCCGTATTGTTGAAATCTACGGTCCTGAATCTTCCGGTAAAACCACACTGACATTGTCCGTGATCGCC
CAGGCTCAGAAAGCCGGCGCGACCTGCGCATTCGTCGATGCCGAGCACGCCCTGGACCCTGAGTACGCCGGCAAGCTGGG
CGTCAACGTCGACGACCTGCTGGTGTCCCAGCCTGACACCGGTGAGCAAGCCCTGGAAATCACCGACATGCTGGTGCGTT
CCAATGCGGTCGACGTGATCATCGTCGACTCCGTGGCGGCGCTGGTGCCGAAAGCTGAAATCGAAGGCGAAATGGGTGAC
ATGCACGTGGGCCTGCAGGCTCGTCTGATGTCCCAGGCACTGCGTAAAATCACCGGTAATATCAAGAACGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGTATGAAAATCGGCGTGATGTTCGGTAGTCCGGAAACGACTACCGGTGGTAACGCGC
TGAAGTTCTATGCGTCGGTTCGTCTGGATATCCGCCGCACGGGTGCGGTGAAAGAAGGTGATGAAGTCGTCGGTAGCGAG
ACCCGCGTCAAGGTTGTAAAGAACAAGGTGGCTTCGCCGTTCCGTCAGGCCGAGTTCCAGATTCTTTACGGCAAGGGCAT
CTACCTCAATGGCGAGATGATCGACCTGGGTGTTCTGCACGGTTTCGTTGAGAAGTCCGGTGCCTGGTATGCCTATAACG
GCACCAAGATCGGTCAGGGTAAGGCCAACTCGGCCAAATACCTGGCGGATAACCCGGATATTGCCGCAACGCTCGAGAAA
CAACTGCGTGACAAACTGCTGTCTCCGGCTTCGGTAGCGGATGCCAAGGCTTCTGCGGTCAAAGAGACCGAAGACGATCT
GGCTGACGCTGATATCTGA
Similar proteins
Only experimentally validated proteins are listed.