Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   D3P44_RS13290 Genome accession   NZ_CP110110
Coordinates   2836818..2837870 (-) Length   350 a.a.
NCBI ID   WP_041104415.1    Uniprot ID   A0A8D3Y250
Organism   Stutzerimonas balearica strain Z8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2831818..2842870
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D3P44_RS13275 (D3P44_013275) - 2833691..2835100 (+) 1410 WP_200291606.1 MBL fold metallo-hydrolase RNA specificity domain-containing protein -
  D3P44_RS13280 (D3P44_013280) - 2835161..2836252 (+) 1092 WP_043221099.1 LOG family protein -
  D3P44_RS13285 (D3P44_013285) recX 2836351..2836812 (-) 462 WP_043221101.1 recombination regulator RecX -
  D3P44_RS13290 (D3P44_013290) recA 2836818..2837870 (-) 1053 WP_041104415.1 recombinase RecA Machinery gene
  D3P44_RS13295 (D3P44_013295) - 2837956..2838453 (-) 498 WP_200628972.1 CinA family protein -
  D3P44_RS13300 (D3P44_013300) - 2838945..2839145 (+) 201 Protein_2605 transposase -
  D3P44_RS13305 (D3P44_013305) - 2839421..2839534 (+) 114 Protein_2606 GlxA family transcriptional regulator -
  D3P44_RS13310 (D3P44_013310) - 2839645..2841237 (+) 1593 WP_212543218.1 sigma-54 interaction domain-containing protein -
  D3P44_RS13315 (D3P44_013315) - 2841451..2841999 (+) 549 WP_234292941.1 OsmC family protein -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 37257.62 Da        Isoelectric Point: 5.3265

>NTDB_id=752422 D3P44_RS13290 WP_041104415.1 2836818..2837870(-) (recA) [Stutzerimonas balearica strain Z8]
MDENKKRALAAALGQIEKQFGKGAVMRMGDHDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
EAQKKGATCAFVDAEHALDPDYAAKLGVNVEDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
SHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVAPPFRQAEFQILYGKGIYRSGEVIDLGVQQGLVEKSGAWYSYQGSKIGQGKANAAKFLEDNPAVGEEIER
LVREKLLVVSSNSKAAAGAVAEDDLVEADY

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=752422 D3P44_RS13290 WP_041104415.1 2836818..2837870(-) (recA) [Stutzerimonas balearica strain Z8]
ATGGACGAGAACAAGAAGCGTGCCTTGGCTGCGGCTCTGGGCCAGATCGAAAAGCAGTTCGGCAAGGGTGCGGTCATGCG
CATGGGCGATCATGATCGCCAGGCCATTCCGGCTATTTCGACCGGCTCGCTCGGGCTCGATATCGCGCTGGGCATCGGCG
GCTTGCCAAAGGGCCGTATCGTCGAGATCTACGGTCCCGAGTCGTCCGGTAAGACCACGCTGACCCTGTCCGTCATTGCT
GAAGCCCAGAAGAAGGGCGCGACCTGCGCCTTCGTTGACGCCGAGCACGCGCTCGACCCCGACTATGCCGCCAAGCTGGG
CGTCAATGTCGAGGATCTGCTGGTTTCTCAGCCGGATACGGGTGAGCAGGCGCTGGAAATCACCGACATGCTGGTGCGCT
CCAATGCCGTCGACGTGATCATCGTCGACTCGGTTGCGGCGCTGGTGCCCAAGGCCGAGATCGAGGGCGAAATGGGCGAC
TCCCACGTCGGTCTGCAGGCGCGCCTGATGTCTCAGGCGCTGCGCAAGATCACCGGCAACATCAAGAACGCCAACTGTCT
GGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAGCCCCGAGACCACCACCGGTGGTAACGCAC
TGAAGTTCTATGCCTCGGTTCGTCTGGACATTCGCCGCACCGGTGCGGTGAAGGAGGGCGACGAGGTAGTTGGCAGCGAG
ACCCGCGTCAAGGTGGTGAAGAACAAGGTGGCGCCGCCGTTCCGCCAGGCCGAGTTCCAGATTCTGTACGGCAAGGGCAT
CTACCGCAGTGGCGAGGTCATCGACCTGGGCGTGCAGCAGGGCCTGGTCGAGAAGTCCGGCGCCTGGTACAGCTATCAGG
GCAGCAAGATCGGGCAGGGTAAAGCCAACGCGGCCAAGTTCCTCGAGGACAACCCGGCTGTAGGCGAAGAGATCGAGCGG
CTGGTTCGTGAAAAGCTGCTGGTGGTCTCCTCGAACAGCAAGGCGGCGGCCGGTGCTGTGGCCGAGGATGATCTGGTCGA
AGCCGACTACTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

91.117

99.714

0.909
  recA Acinetobacter baylyi ADP1

74.212

99.714

0.74
  recA Acinetobacter baumannii D1279779

74.212

99.714

0.74
  recA Vibrio cholerae strain A1552

71.884

98.571

0.709
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.884

98.571

0.709
  recA Glaesserella parasuis strain SC1401

70.029

99.143

0.694
  recA Ralstonia pseudosolanacearum GMI1000

72.561

93.714

0.68
  recA Neisseria gonorrhoeae MS11

71.605

92.571

0.663
  recA Neisseria gonorrhoeae MS11

71.605

92.571

0.663
  recA Neisseria gonorrhoeae strain FA1090

71.605

92.571

0.663
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.874

95.429

0.6
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.914

93.429

0.597
  recA Helicobacter pylori strain NCTC11637

63.914

93.429

0.597
  recA Helicobacter pylori 26695

63.303

93.429

0.591
  recA Streptococcus pyogenes NZ131

57.714

100

0.577
  recA Bacillus subtilis subsp. subtilis str. 168

62.928

91.714

0.577
  recA Streptococcus mutans UA159

60.308

92.857

0.56
  recA Latilactobacillus sakei subsp. sakei 23K

60.125

91.714

0.551
  recA Streptococcus mitis SK321

59.752

92.286

0.551
  recA Streptococcus pneumoniae R6

58.896

93.143

0.549
  recA Streptococcus pneumoniae Rx1

58.896

93.143

0.549
  recA Streptococcus pneumoniae D39

58.896

93.143

0.549
  recA Streptococcus pneumoniae TIGR4

58.896

93.143

0.549
  recA Streptococcus mitis NCTC 12261

59.443

92.286

0.549
  recA Lactococcus lactis subsp. cremoris KW2

57.585

92.286

0.531
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.215

93.143

0.514