Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MPB2EB_RS06900 Genome accession   NZ_AP021872
Coordinates   1558125..1559183 (-) Length   352 a.a.
NCBI ID   WP_185181599.1    Uniprot ID   -
Organism   Mycoavidus sp. B2-EB     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1553125..1564183
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPB2EB_RS06870 (MPB2EB_1360) - 1553367..1553816 (+) 450 WP_185181593.1 nuclear transport factor 2 family protein -
  MPB2EB_RS06875 (MPB2EB_1361) - 1553898..1554482 (-) 585 WP_185181594.1 pilin -
  MPB2EB_RS06880 (MPB2EB_1362) - 1554633..1555337 (-) 705 WP_185181595.1 TerC family protein -
  MPB2EB_RS06885 (MPB2EB_1363) sucD 1555383..1556264 (-) 882 WP_185181596.1 succinate--CoA ligase subunit alpha -
  MPB2EB_RS06890 (MPB2EB_1364) sucC 1556376..1557536 (-) 1161 WP_185181597.1 ADP-forming succinate--CoA ligase subunit beta -
  MPB2EB_RS06895 (MPB2EB_1365) recX 1557593..1558039 (-) 447 WP_185181598.1 recombination regulator RecX -
  MPB2EB_RS06900 (MPB2EB_1366) recA 1558125..1559183 (-) 1059 WP_185181599.1 recombinase RecA Machinery gene
  MPB2EB_RS06905 (MPB2EB_1367) - 1559304..1559873 (-) 570 WP_185181600.1 cytochrome b -
  MPB2EB_RS06910 (MPB2EB_1368) - 1560113..1560619 (+) 507 WP_232534429.1 paraquat-inducible protein A -
  MPB2EB_RS06915 (MPB2EB_1369) - 1560616..1561230 (+) 615 WP_185181602.1 paraquat-inducible protein A -
  MPB2EB_RS06920 (MPB2EB_1370) - 1561236..1562870 (+) 1635 WP_185181603.1 intermembrane transport protein PqiB -
  MPB2EB_RS06925 (MPB2EB_1371) - 1562918..1563556 (+) 639 WP_185181604.1 membrane integrity-associated transporter subunit PqiC -
  MPB2EB_RS06930 (MPB2EB_1372) - 1563525..1564043 (-) 519 WP_185181605.1 hypothetical protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37688.28 Da        Isoelectric Point: 5.3714

>NTDB_id=75136 MPB2EB_RS06900 WP_185181599.1 1558125..1559183(-) (recA) [Mycoavidus sp. B2-EB]
MEVSKKGQANLTAEKGKALTAALAQIEKQFGKGSIMRLGDGEVVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESS
GKTTLTLQVIAEMQKLGGTCAFIDAEHALDVQYAAKLGVKASDLLIAQPDTGEQALEIADALVRSSSVDLIVIDSVAALV
PKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGS
IKKADEVIGSETRVKVVKNKVAPPFREAIFDILYGEGISREGEIIDLGVQAKIVEKAGAWYSYNGERAGQGKDNAREYLR
ENPDIAREIENKVRASFGVNAVTSADEIQEKV

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=75136 MPB2EB_RS06900 WP_185181599.1 1558125..1559183(-) (recA) [Mycoavidus sp. B2-EB]
ATGGAAGTAAGTAAAAAAGGTCAAGCGAATTTAACCGCTGAAAAAGGCAAAGCGCTTACTGCTGCGCTAGCACAAATTGA
AAAGCAATTTGGCAAAGGCTCAATTATGCGTTTGGGCGACGGTGAAGTGGTTGAAGATATTCAGGTCGTTTCTACGGGCT
CATTAGGGCTGGATATTGCACTTGGGGTAGGCGGCTTGCCGCGCGGCCGCGTGGTTGAAATTTATGGGCCAGAATCTTCA
GGGAAAACCACGTTGACTTTACAGGTGATTGCTGAGATGCAAAAACTTGGCGGCACGTGTGCTTTTATTGATGCGGAGCA
TGCTCTTGATGTTCAATATGCAGCAAAGCTGGGTGTTAAAGCGTCTGACCTTCTGATTGCACAGCCGGATACAGGCGAGC
AGGCGCTTGAAATTGCAGATGCGTTGGTGCGTTCGAGTTCGGTTGATTTAATTGTGATTGACTCGGTTGCCGCGCTTGTG
CCTAAAGCGGAAATTGAAGGCGAAATGGGTGATTCTTTGCCTGGGCTGCAAGCACGCTTAATGTCACAGGCATTGCGTAA
GCTTACAGGAACCATCAAGCGGACAAATTGCCTAGTTATTTTTATCAATCAAATCCGGATGAAAATCGGCGTGATGTTCG
GTAACCCGGAAACCACAACAGGTGGCAATGCGCTGAAGTTCTATGCATCGGTACGGCTCGATATTCGGCGCATTGGCTCA
ATCAAAAAAGCGGATGAGGTGATTGGGTCTGAAACCCGTGTGAAAGTGGTCAAAAATAAAGTTGCTCCGCCATTTCGTGA
GGCCATTTTTGATATTTTGTATGGCGAAGGCATTTCTCGTGAGGGTGAAATCATTGACCTTGGCGTACAAGCTAAAATTG
TCGAAAAGGCGGGTGCTTGGTATAGCTACAACGGTGAGCGGGCCGGGCAAGGAAAAGATAATGCGCGGGAGTATCTGCGC
GAAAACCCGGACATTGCGCGTGAGATTGAAAACAAAGTACGTGCTTCATTTGGTGTGAATGCAGTGACCAGCGCTGATGA
AATTCAAGAAAAAGTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(17-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

85.269

100

0.855
  recA Pseudomonas stutzeri DSM 10701

73.795

94.318

0.696
  recA Acinetobacter baylyi ADP1

71.765

96.591

0.693
  recA Acinetobacter baumannii D1279779

70.623

95.739

0.676
  recA Neisseria gonorrhoeae MS11

72.34

93.466

0.676
  recA Neisseria gonorrhoeae strain FA1090

72.34

93.466

0.676
  recA Neisseria gonorrhoeae MS11

72.34

93.466

0.676
  recA Glaesserella parasuis strain SC1401

71.56

92.898

0.665
  recA Vibrio cholerae O1 biovar El Tor strain E7946

72.5

90.909

0.659
  recA Vibrio cholerae strain A1552

72.5

90.909

0.659
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.095

95.739

0.614
  recA Bacillus subtilis subsp. subtilis str. 168

64.329

93.182

0.599
  recA Helicobacter pylori 26695

64.329

93.182

0.599
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.417

92.614

0.597
  recA Helicobacter pylori strain NCTC11637

64.024

93.182

0.597
  recA Latilactobacillus sakei subsp. sakei 23K

62.462

94.602

0.591
  recA Streptococcus mitis NCTC 12261

60.526

97.159

0.588
  recA Streptococcus mutans UA159

58.523

100

0.585
  recA Streptococcus mitis SK321

60.234

97.159

0.585
  recA Streptococcus pneumoniae Rx1

60.234

97.159

0.585
  recA Streptococcus pneumoniae D39

60.234

97.159

0.585
  recA Streptococcus pneumoniae R6

60.234

97.159

0.585
  recA Streptococcus pneumoniae TIGR4

60.234

97.159

0.585
  recA Streptococcus pyogenes NZ131

60.117

96.875

0.582
  recA Lactococcus lactis subsp. cremoris KW2

60.121

94.034

0.565
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60

92.33

0.554

Multiple sequence alignment