Detailed information NTG0749527

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QET42_RS04900
• Genome accession: NZ_CP123237
• Coordinates: 1004224..1005216 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 4588
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 999224..1010216

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QET42_RS04870 (QET42_04870)	ispD	999285..999995 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QET42_RS04875 (QET42_04875)	ispF	999995..1000474 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QET42_RS04880 (QET42_04880)	truD	1000471..1001520 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
QET42_RS04885 (QET42_04885)	surE	1001501..1002262 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QET42_RS04890 (QET42_04890)	pcm	1002256..1002882 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
QET42_RS04895 (QET42_04895)	nlpD	1003067..1004161 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
QET42_RS04900 (QET42_04900)	rpoS	1004224..1005216 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
QET42_RS04905 (QET42_04905)	ygbN	1005310..1006674 (-)	1365	WP_049254918.1	GntP family transporter	-
QET42_RS04910 (QET42_04910)	ygbM	1006763..1007539 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
QET42_RS04915 (QET42_04915)	ygbL	1007544..1008182 (-)	639	WP_001278994.1	aldolase	-
QET42_RS04920 (QET42_04920)	otnK	1008179..1009441 (-)	1263	WP_000590405.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=749527 QET42_RS04900 WP_000081550.1 1004224..1005216(+) (rpoS) [Escherichia coli strain 4588]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=749527 QET42_RS04900 WP_000081550.1 1004224..1005216(+) (rpoS) [Escherichia coli strain 4588]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715