Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   FQS62_RS08345 Genome accession   NZ_CP109812
Coordinates   1742026..1743063 (+) Length   345 a.a.
NCBI ID   WP_049449560.1    Uniprot ID   A0AA42XN58
Organism   Stenotrophomonas sp. SBJS02     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1737026..1748063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FQS62_RS08320 (FQS62_008320) hfq 1737075..1737350 (+) 276 WP_004152891.1 RNA chaperone Hfq -
  FQS62_RS08325 (FQS62_008325) hflX 1737365..1738675 (+) 1311 WP_100442734.1 ribosome rescue GTPase HflX -
  FQS62_RS08330 (FQS62_008330) - 1738798..1739292 (+) 495 WP_010484249.1 nicotinamide-nucleotide amidohydrolase family protein -
  FQS62_RS08335 (FQS62_008335) ubiB 1739327..1741009 (+) 1683 WP_088480351.1 2-polyprenylphenol 6-hydroxylase -
  FQS62_RS08340 (FQS62_008340) lexA 1741186..1741821 (+) 636 WP_005412936.1 transcriptional repressor LexA -
  FQS62_RS08345 (FQS62_008345) recA 1742026..1743063 (+) 1038 WP_049449560.1 recombinase RecA Machinery gene
  FQS62_RS08350 (FQS62_008350) recX 1743174..1743665 (+) 492 WP_049449562.1 recombination regulator RecX -
  FQS62_RS08355 (FQS62_008355) alaS 1743775..1746423 (+) 2649 WP_088480338.1 alanine--tRNA ligase -
  FQS62_RS08360 (FQS62_008360) csrA 1746571..1746774 (+) 204 WP_004152909.1 carbon storage regulator CsrA -
  FQS62_RS08370 (FQS62_008370) - 1747041..1747580 (-) 540 WP_226053529.1 DUF4189 domain-containing protein -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37196.66 Da        Isoelectric Point: 4.7662

>NTDB_id=749527 FQS62_RS08345 WP_049449560.1 1742026..1743063(+) (recA) [Stenotrophomonas sp. SBJS02]
MDENKKRALAAALGQIEKQFGKGSVMRMGDRVVEPVEAIPTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIA
ECQKMGGTAAFIDAEHALDPIYAAKLGVNVDDLLLSQPDTGEQALEIADMLVRSGSVDILVIDSVAALTPKAEIEGEMGD
QLPGLQARLMSQALRKLTGNIKRSNTLVVFINQLRMKIGVMMPGQSPETTTGGNALKFYASVRLDIRRIGAIKKGDEIIG
NQTKIKVVKNKLAPPFKQVITEILYGEGISREGELIDMGVDAKLVEKAGAWYSYGEERIGQGKDNARGYLRDNPTVAAKL
EAELREKFQPTEATREEGDDEGDDE

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=749527 FQS62_RS08345 WP_049449560.1 1742026..1743063(+) (recA) [Stenotrophomonas sp. SBJS02]
ATGGACGAGAACAAGAAGCGCGCCCTCGCTGCAGCTCTGGGCCAGATCGAAAAGCAGTTCGGCAAGGGCTCGGTGATGCG
CATGGGCGACCGCGTGGTTGAGCCCGTCGAGGCTATCCCGACCGGTTCGCTGATGCTCGACATCGCACTGGGCATTGGCG
GTCTGCCGAAGGGCCGTGTCGTTGAAATCTACGGGCCGGAATCCTCGGGCAAGACCACGCTGACCCTGCAGGCCATCGCC
GAATGCCAGAAGATGGGCGGCACTGCGGCCTTCATCGATGCCGAGCACGCGCTGGACCCGATCTACGCCGCCAAGCTGGG
CGTGAACGTGGACGACCTGCTGCTGTCGCAGCCGGATACCGGTGAGCAGGCGCTGGAAATCGCCGACATGCTGGTCCGTT
CGGGTTCGGTCGACATCCTGGTGATCGACTCGGTGGCCGCGCTGACCCCGAAGGCTGAAATCGAAGGCGAGATGGGCGAT
CAGCTGCCGGGCCTGCAGGCCCGCCTGATGAGCCAGGCGCTGCGCAAGCTGACCGGTAACATCAAGCGTTCCAATACCCT
GGTGGTCTTCATCAACCAGCTGCGCATGAAGATCGGTGTGATGATGCCGGGCCAGAGCCCGGAAACCACCACCGGTGGCA
ACGCGCTGAAGTTCTACGCCTCGGTCCGCCTGGACATCCGCCGAATCGGCGCGATCAAGAAGGGCGACGAGATCATCGGC
AACCAGACCAAGATCAAGGTCGTCAAGAACAAGCTGGCGCCTCCGTTCAAGCAGGTCATCACCGAGATCCTGTACGGCGA
AGGCATCAGCCGCGAGGGCGAGCTGATCGACATGGGTGTGGATGCCAAGCTGGTCGAGAAGGCCGGCGCCTGGTACAGCT
ACGGTGAGGAGCGCATCGGCCAGGGCAAGGACAACGCCCGCGGCTACCTGCGCGACAACCCGACGGTTGCCGCGAAGCTC
GAAGCCGAACTGCGCGAGAAGTTCCAGCCGACCGAAGCCACCCGTGAGGAAGGCGACGACGAAGGCGACGACGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

72.156

96.812

0.699
  recA Ralstonia pseudosolanacearum GMI1000

76.266

91.594

0.699
  recA Acinetobacter baylyi ADP1

69.855

100

0.699
  recA Acinetobacter baumannii D1279779

71.601

95.942

0.687
  recA Vibrio cholerae strain A1552

71.779

94.493

0.678
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.779

94.493

0.678
  recA Neisseria gonorrhoeae MS11

65.714

100

0.667
  recA Neisseria gonorrhoeae MS11

65.714

100

0.667
  recA Neisseria gonorrhoeae strain FA1090

65.714

100

0.667
  recA Glaesserella parasuis strain SC1401

65.517

100

0.661
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.473

96.812

0.614
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.047

99.71

0.609
  recA Latilactobacillus sakei subsp. sakei 23K

61.194

97.101

0.594
  recA Bacillus subtilis subsp. subtilis str. 168

62.462

94.203

0.588
  recA Helicobacter pylori strain NCTC11637

61.145

96.232

0.588
  recA Helicobacter pylori 26695

60.542

96.232

0.583
  recA Streptococcus mitis SK321

60.976

95.072

0.58
  recA Streptococcus mitis NCTC 12261

60.366

95.072

0.574
  recA Streptococcus pneumoniae Rx1

60.366

95.072

0.574
  recA Streptococcus pneumoniae D39

60.366

95.072

0.574
  recA Streptococcus pneumoniae R6

60.366

95.072

0.574
  recA Streptococcus pneumoniae TIGR4

60.366

95.072

0.574
  recA Streptococcus pyogenes NZ131

60

95.652

0.574
  recA Streptococcus mutans UA159

60

95.652

0.574
  recA Lactococcus lactis subsp. cremoris KW2

59.077

94.203

0.557
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.975

94.493

0.548