Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   OF800_RS01355 Genome accession   NZ_CP109636
Coordinates   268893..270047 (+) Length   384 a.a.
NCBI ID   WP_264308355.1    Uniprot ID   A0AA46TW51
Organism   Lactococcus garvieae strain Alexii-6_2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 263893..275047
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OF800_RS01345 (OF800_01345) era 266862..267773 (+) 912 WP_264308353.1 GTPase Era -
  OF800_RS01350 (OF800_01350) mutM 267968..268789 (+) 822 WP_264308354.1 DNA-formamidopyrimidine glycosylase -
  OF800_RS01355 (OF800_01355) recA 268893..270047 (+) 1155 WP_264308355.1 recombinase RecA Machinery gene
  OF800_RS01360 (OF800_01360) - 270082..271446 (-) 1365 WP_264308356.1 amino acid permease -
  OF800_RS01365 (OF800_01365) - 271656..272030 (+) 375 WP_003133841.1 YlbF family regulator -
  OF800_RS01370 (OF800_01370) - 272014..272370 (+) 357 WP_014024225.1 YlbG family protein -
  OF800_RS01375 (OF800_01375) - 272429..272947 (-) 519 WP_264308357.1 dithiol-disulfide isomerase -
  OF800_RS01380 (OF800_01380) - 273076..273672 (-) 597 WP_003133845.1 CYTH domain-containing protein -
  OF800_RS01385 (OF800_01385) - 273990..274670 (+) 681 WP_264308358.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 41067.99 Da        Isoelectric Point: 4.9966

>NTDB_id=748678 OF800_RS01355 WP_264308355.1 268893..270047(+) (recA) [Lactococcus garvieae strain Alexii-6_2]
MATKKKKKLEDITKKYGAEREKALKDALDLIEKDFGKGSLMRLGEAASQKVQVTSSGSLALDIALGAGGYPKGRIIEIYG
PESSGKTTVALHAVAQVQAEGGIAAFIDAEHALDPVYAAAIGVDIDQLLLSQPDYGEQGLQIAEKLIESGAVDLVVVDSV
AALTPRAEIDGEIGDSTVGLQARMMSQAMRKLAAGINKTKTTAIFINQLREKVGVMFGSPETTPGGRALKFYASVRLDVR
GSTKIEEGSGDNKTAIGKLTKIKVVKNKVAPPFKVALVDIMFGEGISKTGELLTIAVEEGIVKKAGAWFSYNDEKIGQGA
EKAKAFLKDNPEIFNEIDRKVRQNHGLIEGDEADEKEEDVKPVKADEKAKVEATGVEEIELELE

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=748678 OF800_RS01355 WP_264308355.1 268893..270047(+) (recA) [Lactococcus garvieae strain Alexii-6_2]
ATGGCTACAAAGAAAAAGAAAAAATTAGAAGATATCACAAAAAAATATGGTGCAGAACGTGAAAAAGCCTTAAAAGATGC
GCTTGACCTTATCGAAAAGGATTTTGGTAAAGGTTCTTTGATGCGTTTGGGTGAAGCTGCGAGCCAAAAAGTTCAAGTGA
CAAGTTCAGGAAGCTTGGCTTTGGATATTGCACTTGGTGCTGGTGGTTATCCGAAAGGTCGTATCATCGAAATCTACGGA
CCAGAAAGTTCTGGTAAGACTACGGTTGCGTTGCATGCGGTTGCTCAAGTGCAAGCCGAAGGCGGGATTGCTGCCTTTAT
CGATGCGGAGCACGCTTTGGATCCTGTCTATGCTGCAGCGATCGGTGTCGACATTGACCAACTTCTTTTGTCACAACCTG
ACTATGGTGAACAAGGCTTACAAATTGCTGAAAAATTGATTGAATCTGGTGCAGTGGACCTTGTTGTTGTCGACTCTGTT
GCTGCCTTGACACCACGTGCCGAAATTGACGGCGAAATCGGAGATTCGACAGTTGGTTTGCAAGCACGTATGATGAGTCA
AGCCATGCGTAAGCTTGCTGCAGGCATCAACAAAACAAAAACAACAGCAATCTTTATCAACCAATTGCGTGAAAAAGTTG
GTGTTATGTTTGGGAGTCCTGAAACAACACCTGGTGGTCGTGCCTTGAAATTCTATGCTTCTGTACGTTTAGATGTTCGT
GGCAGCACAAAAATTGAAGAAGGTTCCGGTGACAACAAAACAGCCATTGGTAAATTAACGAAGATTAAAGTCGTTAAAAA
CAAAGTTGCGCCACCGTTTAAAGTTGCTTTAGTAGACATCATGTTTGGCGAAGGTATTTCTAAAACAGGTGAACTCTTAA
CCATTGCCGTTGAAGAAGGCATTGTGAAGAAAGCAGGGGCTTGGTTCTCTTATAATGACGAAAAAATCGGTCAAGGTGCG
GAGAAAGCGAAAGCCTTCCTTAAAGATAATCCTGAAATTTTCAATGAAATCGACCGTAAAGTACGTCAAAATCACGGTTT
GATTGAAGGTGATGAAGCGGATGAAAAAGAAGAAGATGTTAAACCAGTAAAAGCAGATGAAAAAGCAAAAGTTGAAGCTA
CTGGCGTAGAAGAAATCGAGCTGGAATTAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Lactococcus lactis subsp. cremoris KW2

86.364

91.667

0.792
  recA Streptococcus mitis SK321

77.953

99.219

0.773
  recA Streptococcus mitis NCTC 12261

77.953

99.219

0.773
  recA Streptococcus pneumoniae Rx1

77.69

99.219

0.771
  recA Streptococcus pneumoniae D39

77.69

99.219

0.771
  recA Streptococcus pneumoniae R6

77.69

99.219

0.771
  recA Streptococcus pneumoniae TIGR4

77.69

99.219

0.771
  recA Streptococcus mutans UA159

77.112

95.573

0.737
  recA Streptococcus pyogenes NZ131

80.523

89.583

0.721
  recA Latilactobacillus sakei subsp. sakei 23K

63.739

91.927

0.586
  recA Bacillus subtilis subsp. subtilis str. 168

65.455

85.938

0.563
  recA Acinetobacter baylyi ADP1

58.309

89.323

0.521
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.347

87.76

0.521
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.303

85.938

0.518
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.017

89.323

0.518
  recA Glaesserella parasuis strain SC1401

57.31

89.063

0.51
  recA Vibrio cholerae strain A1552

60.185

84.375

0.508
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.185

84.375

0.508
  recA Acinetobacter baumannii D1279779

60.185

84.375

0.508
  recA Helicobacter pylori 26695

58.359

85.677

0.5
  recA Helicobacter pylori strain NCTC11637

58.359

85.677

0.5
  recA Neisseria gonorrhoeae MS11

59.119

82.813

0.49
  recA Neisseria gonorrhoeae MS11

59.119

82.813

0.49
  recA Neisseria gonorrhoeae strain FA1090

59.119

82.813

0.49
  recA Ralstonia pseudosolanacearum GMI1000

58.991

82.552

0.487
  recA Pseudomonas stutzeri DSM 10701

56.173

84.375

0.474