Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   GL2_RS12630 Genome accession   NZ_AP019807
Coordinates   2895660..2896694 (+) Length   344 a.a.
NCBI ID   WP_143730992.1    Uniprot ID   -
Organism   Microbulbifer sp. GL-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2890660..2901694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GL2_RS12610 (GL2_25620) - 2891509..2892759 (+) 1251 WP_143730988.1 hypothetical protein -
  GL2_RS12615 (GL2_25630) - 2893012..2893620 (-) 609 WP_143730989.1 tRNA-uridine aminocarboxypropyltransferase -
  GL2_RS12620 (GL2_25640) - 2893648..2894085 (+) 438 WP_143730990.1 GNAT family N-acetyltransferase -
  GL2_RS12625 (GL2_25650) - 2894973..2895488 (+) 516 WP_143730991.1 CinA family protein -
  GL2_RS12630 (GL2_25660) recA 2895660..2896694 (+) 1035 WP_143730992.1 recombinase RecA Machinery gene
  GL2_RS12635 (GL2_25670) - 2896695..2897180 (+) 486 WP_143730993.1 regulatory protein RecX -
  GL2_RS12640 (GL2_25680) glpK 2897277..2898755 (+) 1479 WP_143730994.1 glycerol kinase GlpK -
  GL2_RS12645 (GL2_25690) - 2898805..2899824 (+) 1020 WP_143730995.1 class I fructose-bisphosphate aldolase -
  GL2_RS12650 (GL2_25700) - 2899875..2900714 (+) 840 WP_143730996.1 alpha/beta hydrolase -
  GL2_RS12655 (GL2_25710) - 2900859..2901044 (+) 186 WP_143730997.1 Trm112 family protein -
  GL2_RS12660 (GL2_25720) - 2901049..2901396 (+) 348 WP_143730998.1 histidine triad nucleotide-binding protein -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 37049.39 Da        Isoelectric Point: 5.1798

>NTDB_id=74222 GL2_RS12630 WP_143730992.1 2895660..2896694(+) (recA) [Microbulbifer sp. GL-2]
MDSNKDKALKAALSQIERQFGKGTVMRMGDKERVRIPAISTGSLGLDVALGIGGLPRGRIVEIYGPESSGKTTLTLQVIA
EAQRKGGTCAFVDAEHALDPIYAEKLGVNVDELIVSQPDTGEQALEVADMLVRSGAVDVLVVDSVAALTPRAEIEGEMGD
SHVGLQARLMSQALRKLTGNIKNTNTLAIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAVKDGDEVVGNE
TRVKVVKNKVAPPFKQTEFQIMYGEGINMVGEIVDYGVKMGLVDKAGAWYSYKGDKIGQGKANATKFLRENQDIRNEIEG
QLRAQLLGDLVPASPEEAAELSEE

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=74222 GL2_RS12630 WP_143730992.1 2895660..2896694(+) (recA) [Microbulbifer sp. GL-2]
ATGGATTCCAATAAAGACAAGGCGCTAAAGGCGGCGCTCTCGCAGATCGAACGCCAGTTTGGCAAAGGCACAGTGATGCG
CATGGGAGATAAGGAGCGCGTGCGTATCCCGGCGATTTCCACTGGCTCCTTAGGCCTGGATGTGGCCCTGGGTATTGGCG
GCCTGCCGCGCGGCCGTATTGTTGAGATCTATGGCCCTGAATCCTCCGGTAAAACCACTCTGACCCTGCAAGTGATTGCC
GAAGCCCAGCGCAAAGGTGGCACTTGTGCGTTTGTTGACGCTGAGCATGCGCTCGATCCTATCTACGCCGAGAAACTCGG
TGTAAATGTTGATGAGCTGATCGTCTCACAACCGGATACCGGCGAGCAGGCCCTGGAAGTGGCTGACATGCTGGTGCGTT
CCGGTGCTGTGGATGTACTGGTTGTGGACTCTGTAGCGGCCCTGACCCCGCGCGCGGAGATTGAGGGTGAGATGGGCGAT
TCCCATGTTGGCCTGCAGGCCCGCCTGATGTCCCAGGCCCTGCGTAAGCTGACCGGTAATATCAAGAATACCAATACCCT
GGCAATCTTCATCAACCAGATCCGTATGAAGATCGGTGTGATGTTTGGCTCCCCGGAAACCACTACCGGTGGTAATGCAC
TCAAGTTCTACTCCTCCGTACGCCTGGATATCCGTCGCATCGGTGCCGTGAAGGATGGCGATGAGGTGGTGGGGAACGAG
ACTCGCGTTAAGGTGGTGAAAAACAAGGTGGCACCGCCGTTCAAACAGACTGAATTCCAAATCATGTATGGCGAAGGCAT
CAACATGGTTGGTGAAATTGTCGATTACGGCGTGAAGATGGGCTTGGTTGATAAGGCTGGTGCCTGGTACAGCTATAAAG
GGGATAAGATTGGCCAGGGCAAGGCCAATGCTACCAAGTTCCTGCGTGAGAACCAGGATATCCGTAATGAGATTGAAGGG
CAGCTGCGCGCGCAGCTGCTGGGTGACCTGGTTCCAGCCAGCCCCGAAGAGGCCGCAGAACTCTCGGAAGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

80.734

95.058

0.767
  recA Acinetobacter baylyi ADP1

72.353

98.837

0.715
  recA Acinetobacter baumannii D1279779

74.006

95.058

0.703
  recA Vibrio cholerae strain A1552

73.394

95.058

0.698
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.394

95.058

0.698
  recA Neisseria gonorrhoeae MS11

71.385

94.477

0.674
  recA Neisseria gonorrhoeae MS11

71.385

94.477

0.674
  recA Neisseria gonorrhoeae strain FA1090

71.385

94.477

0.674
  recA Ralstonia pseudosolanacearum GMI1000

70.517

95.64

0.674
  recA Glaesserella parasuis strain SC1401

71.118

93.605

0.666
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.085

92.733

0.622
  recA Helicobacter pylori strain NCTC11637

61.449

100

0.616
  recA Bacillus subtilis subsp. subtilis str. 168

65.732

93.314

0.613
  recA Helicobacter pylori 26695

60.87

100

0.61
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.84

96.221

0.605
  recA Latilactobacillus sakei subsp. sakei 23K

62.813

93.023

0.584
  recA Streptococcus mutans UA159

61.231

94.477

0.578
  recA Streptococcus pneumoniae D39

60.366

95.349

0.576
  recA Streptococcus mitis NCTC 12261

60.366

95.349

0.576
  recA Streptococcus pneumoniae Rx1

60.366

95.349

0.576
  recA Streptococcus pneumoniae R6

60.366

95.349

0.576
  recA Streptococcus pneumoniae TIGR4

60.366

95.349

0.576
  recA Streptococcus mitis SK321

60.061

95.349

0.573
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60

94.477

0.567
  recA Streptococcus pyogenes NZ131

59.568

94.186

0.561
  recA Lactococcus lactis subsp. cremoris KW2

57.975

94.767

0.549

Multiple sequence alignment