Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | J5O10_RS06430 | Genome accession | NZ_CP107552 |
| Coordinates | 1343690..1344736 (+) | Length | 348 a.a. |
| NCBI ID | WP_003419530.1 | Uniprot ID | A0AAX3GVV5 |
| Organism | Clostridioides difficile strain S0756_078 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1338900..1389534 | 1343690..1344736 | within | 0 |
Gene organization within MGE regions
Location: 1338900..1389534
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J5O10_RS06415 (J5O10_006410) | mnmH | 1340508..1341566 (+) | 1059 | WP_003419524.1 | tRNA 2-selenouridine(34) synthase MnmH | - |
| J5O10_RS06420 (J5O10_006415) | rimO | 1341560..1342894 (+) | 1335 | WP_003419527.1 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| J5O10_RS06425 (J5O10_006420) | pgsA | 1342881..1343423 (+) | 543 | WP_009905407.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| J5O10_RS06430 (J5O10_006425) | recA | 1343690..1344736 (+) | 1047 | WP_003419530.1 | recombinase RecA | Machinery gene |
| J5O10_RS06435 (J5O10_006430) | rny | 1344912..1346453 (+) | 1542 | WP_003428216.1 | ribonuclease Y | - |
| J5O10_RS06440 (J5O10_006435) | - | 1346763..1349099 (+) | 2337 | WP_003419542.1 | diguanylate cyclase | - |
| J5O10_RS06445 (J5O10_006440) | - | 1349905..1350003 (+) | 99 | Protein_1178 | transposase | - |
| J5O10_RS06450 (J5O10_006445) | tnpB | 1350005..1351123 (+) | 1119 | WP_041160402.1 | IS200/IS605 family element RNA-guided endonuclease TnpB | - |
| J5O10_RS06455 (J5O10_006450) | - | 1351455..1353236 (+) | 1782 | WP_003419546.1 | UvrD-helicase domain-containing protein | - |
| J5O10_RS06460 (J5O10_006455) | lepB | 1353316..1353846 (-) | 531 | WP_009905409.1 | signal peptidase I | - |
| J5O10_RS06465 (J5O10_006460) | - | 1353886..1354710 (-) | 825 | WP_009905410.1 | undecaprenyl-diphosphate phosphatase | - |
| J5O10_RS06470 (J5O10_006465) | - | 1354967..1355878 (+) | 912 | WP_022615208.1 | tyrosine-type recombinase/integrase | - |
| J5O10_RS06475 (J5O10_006470) | purB | 1356017..1357462 (+) | 1446 | WP_003419557.1 | adenylosuccinate lyase | - |
| J5O10_RS06480 (J5O10_006475) | - | 1357763..1358215 (+) | 453 | WP_003419561.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| J5O10_RS06485 (J5O10_006480) | - | 1358434..1359630 (-) | 1197 | WP_003419570.1 | pyridoxal phosphate-dependent aminotransferase | - |
| J5O10_RS06490 (J5O10_006485) | galT | 1360015..1360965 (+) | 951 | WP_003419573.1 | galactose-1-phosphate uridylyltransferase | - |
| J5O10_RS06495 (J5O10_006490) | - | 1361086..1361838 (+) | 753 | WP_003419575.1 | exodeoxyribonuclease III | - |
| J5O10_RS06500 (J5O10_006495) | - | 1361930..1362706 (-) | 777 | WP_003419578.1 | 3'-5' exonuclease | - |
| J5O10_RS06505 (J5O10_006500) | - | 1363021..1364919 (+) | 1899 | WP_003419583.1 | glutamine synthetase | - |
| J5O10_RS06510 (J5O10_006505) | - | 1365047..1366168 (-) | 1122 | WP_003419591.1 | MGDG synthase family glycosyltransferase | - |
| J5O10_RS06515 (J5O10_006510) | - | 1366367..1366699 (+) | 333 | WP_009905416.1 | PadR family transcriptional regulator | - |
| J5O10_RS06520 (J5O10_006515) | - | 1366686..1367744 (+) | 1059 | WP_003419595.1 | DUF1700 domain-containing protein | - |
| J5O10_RS06525 (J5O10_006520) | - | 1367737..1368807 (+) | 1071 | WP_003419596.1 | DUF4097 family beta strand repeat-containing protein | - |
| J5O10_RS06530 (J5O10_006525) | - | 1368909..1369445 (+) | 537 | WP_003419598.1 | hypothetical protein | - |
| J5O10_RS06535 (J5O10_006530) | - | 1369565..1370272 (+) | 708 | WP_009905418.1 | lantibiotic protection ABC transporter ATP-binding protein | - |
| J5O10_RS06540 (J5O10_006535) | - | 1370274..1370993 (+) | 720 | WP_003419603.1 | lantibiotic immunity ABC transporter MutE/EpiE family permease subunit | - |
| J5O10_RS06545 (J5O10_006540) | - | 1370995..1371765 (+) | 771 | WP_003419609.1 | lantibiotic immunity ABC transporter MutG family permease subunit | - |
| J5O10_RS06550 (J5O10_006545) | - | 1371899..1373290 (+) | 1392 | WP_029158131.1 | sensor histidine kinase | - |
| J5O10_RS06555 (J5O10_006550) | - | 1373366..1374187 (-) | 822 | WP_003419615.1 | pyridoxamine kinase | - |
| J5O10_RS06560 (J5O10_006555) | - | 1374438..1375592 (+) | 1155 | WP_009905420.1 | amidase domain-containing protein | - |
| J5O10_RS06565 (J5O10_006560) | - | 1375775..1375975 (+) | 201 | WP_003419624.1 | cold-shock protein | - |
| J5O10_RS06570 (J5O10_006565) | - | 1376396..1376824 (+) | 429 | WP_009889129.1 | CBS domain-containing protein | - |
| J5O10_RS06575 (J5O10_006570) | - | 1376967..1377722 (-) | 756 | WP_009889131.1 | peptidylprolyl isomerase | - |
| J5O10_RS06580 (J5O10_006575) | - | 1378423..1378929 (-) | 507 | WP_003419636.1 | ImmA/IrrE family metallo-endopeptidase | - |
| J5O10_RS06585 (J5O10_006580) | - | 1379011..1379331 (-) | 321 | WP_003419639.1 | XRE family transcriptional regulator | - |
| J5O10_RS06590 (J5O10_006585) | - | 1379500..1379697 (+) | 198 | WP_003419641.1 | helix-turn-helix transcriptional regulator | - |
| J5O10_RS06595 (J5O10_006590) | - | 1379801..1380241 (+) | 441 | WP_003419643.1 | hypothetical protein | - |
| J5O10_RS06600 (J5O10_006595) | - | 1380490..1380933 (+) | 444 | WP_003419644.1 | phage tail terminator family protein | - |
| J5O10_RS06605 (J5O10_006600) | - | 1380938..1382002 (+) | 1065 | WP_003419645.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| J5O10_RS06610 (J5O10_006605) | - | 1382016..1382444 (+) | 429 | WP_003419646.1 | phage tail tube protein | - |
| J5O10_RS06615 (J5O10_006610) | - | 1382558..1383004 (+) | 447 | WP_003419647.1 | phage tail assembly chaperone | - |
| J5O10_RS06620 (J5O10_006615) | - | 1383198..1385651 (+) | 2454 | WP_003419649.1 | hypothetical protein | - |
| J5O10_RS06625 (J5O10_006620) | - | 1385651..1386073 (+) | 423 | WP_003419651.1 | phage baseplate protein | - |
| J5O10_RS06630 (J5O10_006625) | - | 1386355..1387884 (+) | 1530 | WP_003419653.1 | NlpC/P60 family protein | - |
| J5O10_RS06635 (J5O10_006630) | - | 1387900..1388226 (+) | 327 | WP_003419655.1 | DUF2577 family protein | - |
| J5O10_RS06640 (J5O10_006635) | - | 1388226..1388654 (+) | 429 | WP_003419656.1 | DUF2634 domain-containing protein | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37387.68 Da Isoelectric Point: 4.8236
>NTDB_id=740615 J5O10_RS06430 WP_003419530.1 1343690..1344736(+) (recA) [Clostridioides difficile strain S0756_078]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTNEI
DEKVRAFYNLNEEHEEAGNSVSKEIVEE
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTNEI
DEKVRAFYNLNEEHEEAGNSVSKEIVEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=740615 J5O10_RS06430 WP_003419530.1 1343690..1344736(+) (recA) [Clostridioides difficile strain S0756_078]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGATATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCACTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATACGCAAAAGC
TTTGGGCGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGACTCTCACGTAGGGTTACAAGCTAGACTTATGTCGCAAGCTCTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCATTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGACACAATAAAACAAGGAGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTCGTTAAAAATAAAGTAGCACCTCCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTCTAGATATAGCTGCTGATGTAGATATAGTAAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAGGATAATTTAGATTTAACTAATGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAAGCAGGTAATTCAGTATCAAAAGAAATTGTAGA
AGAATAA
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGATATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCACTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATACGCAAAAGC
TTTGGGCGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGACTCTCACGTAGGGTTACAAGCTAGACTTATGTCGCAAGCTCTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCATTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGACACAATAAAACAAGGAGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTCGTTAAAAATAAAGTAGCACCTCCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTCTAGATATAGCTGCTGATGTAGATATAGTAAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAGGATAATTTAGATTTAACTAATGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAAGCAGGTAATTCAGTATCAAAAGAAATTGTAGA
AGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.