Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   OEG81_RS10345 Genome accession   NZ_CP107548
Coordinates   2167440..2168510 (-) Length   356 a.a.
NCBI ID   WP_264129151.1    Uniprot ID   -
Organism   Pollutimonas sp. M17     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2162440..2173510
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OEG81_RS10330 (OEG81_10330) metE 2163007..2165301 (-) 2295 WP_264129148.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  OEG81_RS10335 (OEG81_10335) - 2165461..2166378 (+) 918 WP_264129149.1 LysR family transcriptional regulator -
  OEG81_RS10340 (OEG81_10340) recX 2166903..2167421 (-) 519 WP_264129150.1 recombination regulator RecX -
  OEG81_RS10345 (OEG81_10345) recA 2167440..2168510 (-) 1071 WP_264129151.1 recombinase RecA Machinery gene
  OEG81_RS10350 (OEG81_10350) - 2168714..2169403 (+) 690 WP_264129152.1 response regulator transcription factor -
  OEG81_RS10355 (OEG81_10355) - 2169422..2170921 (+) 1500 WP_264129153.1 sensor histidine kinase -
  OEG81_RS10360 (OEG81_10360) - 2171184..2172809 (+) 1626 WP_264132564.1 MFS transporter -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 38021.50 Da        Isoelectric Point: 5.3228

>NTDB_id=740560 OEG81_RS10345 WP_264129151.1 2167440..2168510(-) (recA) [Pollutimonas sp. M17]
MDDKNSKAAGERSKALAAALSQIEKQFGKGSVMRYGDDTVEHDIQVVSTGSLGLDIALGVGGLPRGRVIEIYGPESSGKT
TLTLQVIAEMQKIGGTCAFVDAEHALDVQYASKLGVNLSDLLISQPDTGEQALEITDALVRSGSVDLIVIDSVAALTPKA
EIEGDMGDSLPGLQARLMSQALRKLTATIKRANCMVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGAIKK
GDEVVGNETRVKVVKNKVAPPFKQAEFDIMYGAGISREGEIIDLGVQAGIVDKAGAWFSYSGTRIGQGKDNVREYLKEHP
EMAFEIENRVREQLGVIPQAAATVSKAAVPSAEPEA

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=740560 OEG81_RS10345 WP_264129151.1 2167440..2168510(-) (recA) [Pollutimonas sp. M17]
ATGGACGACAAGAACAGCAAAGCCGCCGGCGAACGCAGCAAGGCACTGGCCGCCGCCTTATCCCAGATTGAAAAGCAATT
TGGCAAAGGCTCGGTCATGCGCTACGGCGACGACACTGTCGAGCACGATATCCAGGTCGTCTCCACCGGCTCGCTCGGGC
TGGACATCGCACTGGGGGTGGGCGGCCTGCCGCGCGGCCGCGTCATCGAAATCTACGGCCCCGAATCGTCCGGCAAGACC
ACGCTCACCCTGCAGGTCATCGCCGAAATGCAAAAAATCGGCGGCACCTGCGCCTTCGTCGACGCCGAGCACGCGCTCGA
CGTCCAGTACGCCTCCAAGCTGGGCGTCAATCTGTCCGACCTGCTCATTTCCCAGCCCGATACCGGCGAACAGGCCCTGG
AAATCACCGATGCGCTGGTGCGCTCGGGTTCGGTCGACCTCATCGTCATCGACTCGGTCGCGGCCCTGACGCCCAAGGCC
GAAATCGAAGGCGACATGGGCGACTCGCTGCCGGGCCTGCAAGCCCGCCTCATGAGCCAGGCCCTGCGCAAGCTGACCGC
CACCATCAAGCGCGCCAACTGCATGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTCATGTTCGGCAACCCCG
AAACCACCACGGGCGGGAACGCGCTCAAGTTCTATTCCTCGGTGCGGCTCGACATCCGCCGCATCGGCGCCATCAAGAAG
GGCGACGAGGTCGTGGGCAACGAAACCCGCGTCAAGGTGGTCAAGAACAAGGTGGCGCCTCCGTTCAAGCAGGCCGAGTT
CGACATCATGTACGGCGCCGGCATCTCGCGCGAGGGCGAAATCATCGACCTGGGCGTGCAGGCGGGCATCGTGGACAAGG
CCGGCGCCTGGTTCAGCTACAGCGGCACCCGTATCGGTCAGGGCAAGGACAATGTCCGCGAATACCTGAAAGAACATCCT
GAAATGGCCTTCGAGATCGAAAACCGGGTTCGCGAGCAATTGGGCGTCATTCCGCAAGCCGCCGCCACCGTCAGCAAGGC
GGCGGTTCCCAGCGCCGAACCCGAGGCCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(14-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

81.79

91.011

0.744
  recA Pseudomonas stutzeri DSM 10701

71.884

96.91

0.697
  recA Acinetobacter baylyi ADP1

71.856

93.82

0.674
  recA Acinetobacter baumannii D1279779

73.994

90.73

0.671
  recA Neisseria gonorrhoeae MS11

71.779

91.573

0.657
  recA Neisseria gonorrhoeae MS11

71.779

91.573

0.657
  recA Neisseria gonorrhoeae strain FA1090

71.779

91.573

0.657
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.827

90.73

0.652
  recA Vibrio cholerae strain A1552

71.827

90.73

0.652
  recA Glaesserella parasuis strain SC1401

70.303

92.697

0.652
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.565

92.416

0.615
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.644

91.573

0.601
  recA Bacillus subtilis subsp. subtilis str. 168

64.724

91.573

0.593
  recA Helicobacter pylori strain NCTC11637

64.11

91.573

0.587
  recA Helicobacter pylori 26695

63.804

91.573

0.584
  recA Latilactobacillus sakei subsp. sakei 23K

59.77

97.753

0.584
  recA Streptococcus mitis SK321

58.857

98.315

0.579
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.158

90.73

0.573
  recA Streptococcus pneumoniae D39

59.824

95.787

0.573
  recA Streptococcus pneumoniae Rx1

59.824

95.787

0.573
  recA Streptococcus pneumoniae R6

59.824

95.787

0.573
  recA Streptococcus pneumoniae TIGR4

59.824

95.787

0.573
  recA Streptococcus mitis NCTC 12261

59.531

95.787

0.57
  recA Streptococcus pyogenes NZ131

60.661

93.539

0.567
  recA Streptococcus mutans UA159

59.347

94.663

0.562
  recA Lactococcus lactis subsp. cremoris KW2

57.478

95.787

0.551