Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   OED01_RS06560 Genome accession   NZ_CP107546
Coordinates   1332627..1333673 (+) Length   348 a.a.
NCBI ID   WP_264157571.1    Uniprot ID   -
Organism   Microbacterium sp. M28     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1327627..1338673
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OED01_RS06535 (OED01_06535) - 1327861..1330587 (+) 2727 WP_264157567.1 FtsK/SpoIIIE family DNA translocase -
  OED01_RS06540 (OED01_06540) pgsA 1330587..1331168 (+) 582 WP_264157568.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  OED01_RS06545 (OED01_06545) - 1331165..1331647 (+) 483 WP_264157569.1 CinA family protein -
  OED01_RS06550 (OED01_06550) - 1331810..1332118 (+) 309 WP_243225052.1 helix-turn-helix domain-containing protein -
  OED01_RS06555 (OED01_06555) - 1332137..1332361 (+) 225 WP_264157570.1 DUF3046 domain-containing protein -
  OED01_RS06560 (OED01_06560) recA 1332627..1333673 (+) 1047 WP_264157571.1 recombinase RecA Machinery gene
  OED01_RS06565 (OED01_06565) - 1333673..1334482 (+) 810 WP_264157572.1 regulatory protein RecX -
  OED01_RS06570 (OED01_06570) miaB 1334523..1336073 (+) 1551 WP_264157573.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  OED01_RS06575 (OED01_06575) miaA 1336227..1337132 (+) 906 WP_264157574.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -
  OED01_RS06580 (OED01_06580) - 1337129..1337659 (+) 531 WP_264157575.1 dihydrofolate reductase family protein -
  OED01_RS06585 (OED01_06585) - 1337669..1338130 (+) 462 WP_264157576.1 NUDIX hydrolase -
  OED01_RS06590 (OED01_06590) - 1338127..1338546 (+) 420 WP_264157577.1 GNAT family acetyltransferase -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37231.46 Da        Isoelectric Point: 5.8149

>NTDB_id=740542 OED01_RS06560 WP_264157571.1 1332627..1333673(+) (recA) [Microbacterium sp. M28]
MPSPADREKALESALAQIDRQFGKGSVMRLGSDERAPVEVIPTGSIALDVALGVGGLPRGRIIEIYGPESSGKTTLTLHA
IANVQRQGGIAAFVDAEHALDPDYAKKLGVDIDALLVSQPDTGEQALEIADMLVRSGAIDLVVIDSVAALVPRAEIEGEM
GDSHVGLQARLMSQALRKLTGGLNQTNTTMIFINQLREKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGTEAVG
NRTRVKVVKNKMAPPFKQAEFDILYGIGISREGSLIDFGVEHGIVKKSGSWYTYDGDQLGQGKENARTFLLNNPDIARTI
ETQIKQKLGIGGAAASEAADELAQRRPA

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=740542 OED01_RS06560 WP_264157571.1 1332627..1333673(+) (recA) [Microbacterium sp. M28]
ATGCCATCACCCGCAGACCGCGAGAAGGCCCTCGAATCGGCCCTCGCCCAGATCGACCGCCAGTTCGGAAAGGGCTCGGT
CATGCGACTGGGCAGCGACGAGCGCGCGCCTGTCGAGGTCATTCCCACCGGCTCCATCGCGCTGGATGTCGCGCTCGGCG
TCGGTGGGCTGCCCCGCGGACGCATCATCGAGATCTACGGCCCCGAGTCCTCCGGTAAGACCACTCTGACCCTGCATGCG
ATCGCGAACGTGCAGCGTCAGGGCGGCATCGCCGCGTTCGTCGACGCAGAGCACGCGCTCGACCCCGACTACGCGAAGAA
GCTCGGCGTCGACATCGACGCGCTGCTGGTGTCCCAGCCGGACACCGGCGAGCAGGCGCTCGAGATCGCGGACATGCTGG
TGCGGTCGGGCGCGATCGACCTCGTCGTCATCGACTCCGTCGCCGCGCTCGTGCCCCGCGCCGAGATCGAGGGCGAGATG
GGTGATTCGCACGTCGGTCTCCAGGCGCGCCTGATGTCGCAGGCGCTCCGCAAGCTCACCGGTGGTCTCAACCAGACCAA
CACGACCATGATCTTCATCAACCAGCTGCGTGAGAAGATCGGCGTCTTCTTCGGATCCCCGGAGACCACGGCCGGCGGTA
AGGCGCTGAAGTTCTACGCCTCGGTCCGCCTGGACATCCGTCGTATCGAGACGCTGAAGGACGGTACGGAGGCGGTCGGA
AACCGCACGCGCGTGAAGGTCGTCAAGAACAAGATGGCTCCGCCGTTCAAGCAGGCGGAGTTCGACATCCTCTACGGCAT
CGGCATCTCCCGCGAAGGCAGCCTGATCGACTTCGGCGTGGAGCACGGCATCGTGAAGAAGTCGGGCTCCTGGTACACCT
ACGACGGTGACCAGCTCGGCCAGGGCAAGGAGAACGCGCGTACGTTCCTCCTCAACAACCCCGACATCGCGCGGACGATC
GAGACGCAGATCAAGCAGAAGCTGGGCATCGGCGGTGCCGCGGCTTCTGAGGCTGCGGATGAGCTCGCTCAGCGCCGCCC
GGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

66.471

97.701

0.649
  recA Neisseria gonorrhoeae strain FA1090

65.015

98.563

0.641
  recA Neisseria gonorrhoeae MS11

65.015

98.563

0.641
  recA Neisseria gonorrhoeae MS11

65.015

98.563

0.641
  recA Acinetobacter baumannii D1279779

65.782

97.414

0.641
  recA Acinetobacter baylyi ADP1

65.179

96.552

0.629
  recA Bacillus subtilis subsp. subtilis str. 168

67.178

93.678

0.629
  recA Ralstonia pseudosolanacearum GMI1000

66.667

93.966

0.626
  recA Vibrio cholerae strain A1552

66.873

92.816

0.621
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.873

92.816

0.621
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.315

96.839

0.603
  recA Streptococcus mitis NCTC 12261

60.519

99.713

0.603
  recA Streptococcus mitis SK321

60.519

99.713

0.603
  recA Streptococcus pneumoniae Rx1

60.345

100

0.603
  recA Streptococcus pneumoniae TIGR4

60.345

100

0.603
  recA Streptococcus pneumoniae R6

60.345

100

0.603
  recA Streptococcus pneumoniae D39

60.345

100

0.603
  recA Glaesserella parasuis strain SC1401

61.224

98.563

0.603
  recA Latilactobacillus sakei subsp. sakei 23K

63.385

93.391

0.592
  recA Streptococcus pyogenes NZ131

58.689

100

0.592
  recA Helicobacter pylori strain NCTC11637

62.121

94.828

0.589
  recA Helicobacter pylori 26695

62.121

94.828

0.589
  recA Lactococcus lactis subsp. cremoris KW2

61.212

94.828

0.58
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.094

94.54

0.578
  recA Streptococcus mutans UA159

60.486

94.54

0.572
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.062

91.954

0.543