Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RxyAA322_RS03700 Genome accession   NZ_AP019791
Coordinates   706586..707614 (+) Length   342 a.a.
NCBI ID   WP_274596093.1    Uniprot ID   A0A510HFZ6
Organism   Rubrobacter xylanophilus strain AA3-22     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 701586..712614
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RxyAA322_RS03685 (RxyAA322_07320) - 701662..703308 (+) 1647 WP_143526971.1 ribonuclease J -
  RxyAA322_RS03690 (RxyAA322_07330) - 703375..705573 (+) 2199 WP_143526972.1 DNA translocase FtsK -
  RxyAA322_RS03695 (RxyAA322_07340) - 705589..706461 (+) 873 WP_143526973.1 RodZ domain-containing protein -
  RxyAA322_RS03700 (RxyAA322_07350) recA 706586..707614 (+) 1029 WP_274596093.1 recombinase RecA Machinery gene
  RxyAA322_RS03705 (RxyAA322_07360) - 707627..708250 (+) 624 WP_143526974.1 regulatory protein RecX -
  RxyAA322_RS03710 (RxyAA322_07370) rny 708321..709850 (+) 1530 WP_244299850.1 ribonuclease Y -
  RxyAA322_RS03715 (RxyAA322_07380) - 709855..710784 (+) 930 WP_143526976.1 ATP-binding protein -
  RxyAA322_RS03720 (RxyAA322_07390) - 710795..712111 (+) 1317 WP_172620657.1 MiaB/RimO family radical SAM methylthiotransferase -

Sequence

Protein


Download         Length: 342 a.a.        Molecular weight: 36810.84 Da        Isoelectric Point: 5.5544

>NTDB_id=74024 RxyAA322_RS03700 WP_274596093.1 706586..707614(+) (recA) [Rubrobacter xylanophilus strain AA3-22]
MDKSKAIDTAVSQIERQFGKGSIMRMGDRASQKVASISTGSLALDLALGVGGVPRGRIVEIFGPESSGKTTLALHIIAEA
QRAGGLAAFIDAEHALDPTYAEAIGVDLENLYFSQPDSGEQALEIADTLVRSGALDAVVIDSVAALVPRAEIEGEMGDSH
VGLQARLMSQALRKLSGSLSRSGTTAIFINQLREKIGVMFGSPETTPGGRALKFYASVRMDIRRIGALKAGNETVGNQTR
VKIVKNKVAPPFKEVTFDIMYGEGISREGSLLDVGIEQGVIQKSGAWFAYGEERIGQGRENARKFLKEHPEVRDRITREV
YERLGLAGDRGEELEDRAEPVL

Nucleotide


Download         Length: 1029 bp        

>NTDB_id=74024 RxyAA322_RS03700 WP_274596093.1 706586..707614(+) (recA) [Rubrobacter xylanophilus strain AA3-22]
TTGGACAAGAGCAAGGCGATAGACACCGCCGTATCGCAGATAGAGAGACAGTTTGGTAAGGGCTCGATCATGCGCATGGG
CGACCGGGCCTCCCAGAAGGTCGCCTCCATCTCCACCGGCTCCCTGGCGCTCGACCTCGCCCTCGGCGTCGGCGGGGTCC
CGCGCGGACGCATCGTGGAGATCTTCGGCCCCGAGTCCAGCGGTAAGACCACCCTCGCCCTGCACATCATCGCCGAGGCC
CAGAGGGCCGGCGGGCTTGCCGCCTTCATCGACGCCGAACACGCCCTCGACCCGACCTACGCCGAGGCCATCGGCGTCGA
CCTCGAAAACCTCTACTTCTCCCAGCCCGACAGCGGCGAGCAGGCGCTGGAGATCGCAGACACCCTAGTCCGCTCCGGCG
CCCTCGACGCCGTGGTCATCGACTCGGTGGCCGCGCTGGTGCCTAGAGCTGAGATAGAGGGTGAGATGGGCGACTCTCAC
GTGGGACTTCAGGCCCGTCTCATGAGCCAGGCGTTGAGGAAGCTCTCGGGTTCGCTCTCGCGGTCGGGGACCACGGCGAT
CTTCATAAACCAGCTGCGGGAGAAGATCGGGGTGATGTTTGGCTCTCCCGAGACCACGCCGGGGGGGCGGGCGCTGAAGT
TCTACGCGAGCGTACGGATGGACATCCGGCGGATCGGGGCTCTTAAGGCCGGCAACGAGACGGTGGGCAACCAGACACGG
GTGAAGATCGTGAAGAACAAGGTTGCGCCGCCGTTCAAGGAGGTCACCTTCGACATCATGTACGGGGAGGGGATCTCCAG
GGAGGGAAGCCTCCTGGACGTGGGCATAGAGCAGGGGGTCATCCAGAAGAGCGGGGCCTGGTTCGCCTATGGTGAGGAGA
GGATCGGTCAGGGGCGGGAGAACGCCCGCAAGTTCCTCAAGGAGCACCCGGAGGTGCGCGACCGGATCACCCGCGAGGTC
TACGAGCGGCTGGGGCTCGCCGGGGACCGGGGGGAGGAGCTGGAGGACAGGGCCGAGCCGGTCCTGTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(5-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A510HFZ6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

65.846

95.029

0.626
  recA Ralstonia pseudosolanacearum GMI1000

67.732

91.52

0.62
  recA Streptococcus pneumoniae TIGR4

62.353

99.415

0.62
  recA Streptococcus pneumoniae Rx1

62.353

99.415

0.62
  recA Streptococcus pneumoniae D39

62.353

99.415

0.62
  recA Streptococcus pneumoniae R6

62.353

99.415

0.62
  recA Neisseria gonorrhoeae strain FA1090

65.938

93.567

0.617
  recA Neisseria gonorrhoeae MS11

65.938

93.567

0.617
  recA Neisseria gonorrhoeae MS11

65.938

93.567

0.617
  recA Acinetobacter baumannii D1279779

61.404

100

0.614
  recA Streptococcus mitis NCTC 12261

62.315

98.538

0.614
  recA Lactococcus lactis subsp. cremoris KW2

63.253

97.076

0.614
  recA Streptococcus mutans UA159

63.222

96.199

0.608
  recA Latilactobacillus sakei subsp. sakei 23K

62.462

97.368

0.608
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.087

94.444

0.605
  recA Vibrio cholerae strain A1552

64.087

94.444

0.605
  recA Streptococcus mitis SK321

62.918

96.199

0.605
  recA Helicobacter pylori strain NCTC11637

63.385

95.029

0.602
  recA Helicobacter pylori 26695

63.385

95.029

0.602
  recA Pseudomonas stutzeri DSM 10701

63.777

94.444

0.602
  recA Streptococcus pyogenes NZ131

62.5

95.906

0.599
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.294

99.415

0.599
  recA Acinetobacter baylyi ADP1

63.158

94.444

0.596
  recA Glaesserella parasuis strain SC1401

63.354

94.152

0.596
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.438

93.567

0.594
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.486

96.199

0.582

Multiple sequence alignment