Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   K5607_RS06310 Genome accession   NZ_AP019782
Coordinates   1347938..1348978 (+) Length   346 a.a.
NCBI ID   WP_054774373.1    Uniprot ID   A0A8D4VQM0
Organism   Methylogaea oryzae strain E10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1342938..1353978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5607_RS06290 (MoryE10_12320) - 1343483..1344556 (-) 1074 WP_221048553.1 transketolase C-terminal domain-containing protein -
  K5607_RS06295 (MoryE10_12330) - 1344549..1345490 (-) 942 WP_221048554.1 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha -
  K5607_RS06300 (MoryE10_12340) - 1345492..1346457 (-) 966 WP_221048555.1 glycosyltransferase family 9 protein -
  K5607_RS06305 (MoryE10_12350) - 1346450..1347619 (-) 1170 WP_221048556.1 radical SAM protein -
  K5607_RS06310 (MoryE10_12360) recA 1347938..1348978 (+) 1041 WP_054774373.1 recombinase RecA Machinery gene
  K5607_RS06315 (MoryE10_12370) - 1349014..1349436 (+) 423 WP_221048557.1 regulatory protein RecX -
  K5607_RS06320 (MoryE10_12380) alaS 1349446..1352055 (+) 2610 WP_221048558.1 alanine--tRNA ligase -
  K5607_RS06325 (MoryE10_12390) - 1352092..1353318 (+) 1227 WP_054773794.1 aspartate kinase -
  K5607_RS06330 (MoryE10_12400) csrA 1353454..1353639 (+) 186 WP_054773795.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37300.71 Da        Isoelectric Point: 5.2022

>NTDB_id=73976 K5607_RS06310 WP_054774373.1 1347938..1348978(+) (recA) [Methylogaea oryzae strain E10]
MDENKRKALGAALLQIEKQFGKGSVMRMGDVAAVRDLEVIPTGSLALDIALGVGGLPRGRIVEIYGPESSGKTTLTLEVI
AQAQKLGGTAAFVDAEHALDPSYAEKIGVNLDDLLVSQPDTGEQALEIADMLVRSGSIDVVVIDSVAALTPKAEIEGEMG
DSHVGLQARLMSQALRKLTANIKRSNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGN
ETRVKVVKNKVAPPFKQAEFEIFYGEGVSREGELIELGVQHELIQKSGAWYSYGSDRIGQGKDNVRKYLKEHPEMTREVE
AKIREKVFAGVIAAPGPKAEAAEIED

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=73976 K5607_RS06310 WP_054774373.1 1347938..1348978(+) (recA) [Methylogaea oryzae strain E10]
ATGGACGAAAACAAACGTAAGGCGCTGGGCGCGGCGCTGCTGCAGATCGAAAAGCAGTTCGGCAAGGGCTCGGTCATGCG
CATGGGCGACGTGGCGGCGGTGCGCGATTTGGAAGTGATTCCCACCGGCTCCCTCGCCTTGGATATCGCCCTCGGCGTGG
GCGGTTTGCCGCGCGGCCGCATCGTGGAAATCTACGGCCCGGAATCCTCGGGCAAAACCACCCTGACTCTGGAAGTGATC
GCCCAGGCGCAGAAGTTGGGCGGTACGGCGGCTTTCGTCGATGCCGAGCACGCCTTGGATCCGTCGTACGCGGAAAAAAT
CGGCGTCAACCTGGACGACCTGTTGGTGTCCCAGCCCGACACCGGCGAGCAGGCGCTGGAAATCGCCGACATGCTGGTGC
GCTCCGGCTCCATCGACGTGGTGGTGATCGACTCGGTGGCCGCACTGACGCCCAAGGCGGAAATCGAAGGCGAGATGGGC
GATTCCCACGTGGGCCTGCAGGCTCGCCTTATGTCCCAGGCGCTGCGCAAGCTCACCGCCAACATCAAGCGTTCCAACAC
CCTGGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTCATGTTCGGCAGCCCGGAAACCACCACCGGCGGCAACG
CGCTGAAGTTCTATGCTTCCGTGCGCTTGGACATCCGCCGCACCGGCGCCATCAAGGACGGCGACGAGGTAGTGGGCAAC
GAAACCCGCGTCAAGGTCGTCAAGAACAAGGTCGCCCCGCCTTTCAAACAGGCCGAGTTCGAGATTTTCTACGGCGAAGG
CGTGTCCCGCGAGGGCGAGCTGATCGAGTTGGGCGTGCAGCACGAACTGATACAGAAATCCGGCGCTTGGTACAGCTACG
GCAGCGACCGCATCGGCCAAGGCAAGGACAACGTGCGCAAATACCTCAAGGAGCATCCCGAAATGACGCGGGAGGTCGAG
GCCAAGATTCGCGAAAAAGTCTTCGCCGGCGTGATCGCGGCGCCCGGCCCCAAGGCCGAGGCCGCGGAGATCGAAGACTG
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

76.435

95.665

0.731
  recA Vibrio cholerae strain A1552

74.695

94.798

0.708
  recA Vibrio cholerae O1 biovar El Tor strain E7946

74.695

94.798

0.708
  recA Neisseria gonorrhoeae MS11

75

93.642

0.702
  recA Neisseria gonorrhoeae MS11

75

93.642

0.702
  recA Neisseria gonorrhoeae strain FA1090

75

93.642

0.702
  recA Acinetobacter baylyi ADP1

73.476

94.798

0.697
  recA Acinetobacter baumannii D1279779

72.866

94.798

0.691
  recA Ralstonia pseudosolanacearum GMI1000

76.282

90.173

0.688
  recA Glaesserella parasuis strain SC1401

70.462

93.931

0.662
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.967

96.243

0.645
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.72

94.798

0.604
  recA Helicobacter pylori strain NCTC11637

59.827

100

0.598
  recA Bacillus subtilis subsp. subtilis str. 168

64.286

93.064

0.598
  recA Streptococcus mitis NCTC 12261

59.654

100

0.598
  recA Streptococcus mitis SK321

59.654

100

0.598
  recA Helicobacter pylori 26695

59.538

100

0.595
  recA Streptococcus pneumoniae TIGR4

62.883

94.22

0.592
  recA Streptococcus pneumoniae Rx1

62.883

94.22

0.592
  recA Streptococcus pneumoniae D39

62.883

94.22

0.592
  recA Streptococcus pneumoniae R6

62.883

94.22

0.592
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.446

95.954

0.59
  recA Latilactobacillus sakei subsp. sakei 23K

63.354

93.064

0.59
  recA Streptococcus pyogenes NZ131

62.195

94.798

0.59
  recA Streptococcus mutans UA159

61.35

94.22

0.578
  recA Lactococcus lactis subsp. cremoris KW2

60.494

93.642

0.566

Multiple sequence alignment