Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   N3Z32_RS19180 Genome accession   NZ_CP107244
Coordinates   4271121..4272182 (-) Length   353 a.a.
NCBI ID   WP_268079057.1    Uniprot ID   -
Organism   Achromobacter sp. SS2-2022     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4266121..4277182
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N3Z32_RS19165 (N3Z32_19180) metE 4266796..4269093 (-) 2298 WP_268079054.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  N3Z32_RS19170 (N3Z32_19185) - 4269235..4270155 (+) 921 WP_268079055.1 LysR family transcriptional regulator -
  N3Z32_RS19175 (N3Z32_19190) recX 4270270..4270998 (-) 729 WP_268079056.1 recombination regulator RecX -
  N3Z32_RS19180 (N3Z32_19195) recA 4271121..4272182 (-) 1062 WP_268079057.1 recombinase RecA Machinery gene
  N3Z32_RS19185 (N3Z32_19200) - 4272445..4273134 (+) 690 WP_006218337.1 response regulator transcription factor -
  N3Z32_RS19190 (N3Z32_19205) - 4273247..4274623 (+) 1377 WP_268082487.1 sensor histidine kinase -
  N3Z32_RS19195 (N3Z32_19210) - 4274830..4276506 (+) 1677 WP_268079058.1 MFS transporter -
  N3Z32_RS19200 (N3Z32_19215) - 4276816..4277025 (-) 210 WP_259251669.1 hypothetical protein -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 37989.37 Da        Isoelectric Point: 5.3334

>NTDB_id=738746 N3Z32_RS19180 WP_268079057.1 4271121..4272182(-) (recA) [Achromobacter sp. SS2-2022]
MDDKTTKAAASEKAKALAAALSQIEKQFGKGSIMRYGDNEVSHDIQVVSTGSLGLDIALGVGGLPRGRVIEVYGPESSGK
TTLTLQVIAEMQKIGGTCAFVDAEHALDVQYANKLGVNLTDLLISQPDTGEQALEITDALVRSGSVDLIVIDSVAALVPK
AEIEGEMGDSLPGLQARLMSQALRKLTATIKRTNCMVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIK
KGDEVVGNETRVKVVKNKVAPPFKQAEFDIMYGAGISREGEIIDLGVAASVVDKSGAWYSYNGNRIGQGKDNVREYLKEH
RDMAIEIENRVRENQGIVSRAAEFVPTAEDTAE

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=738746 N3Z32_RS19180 WP_268079057.1 4271121..4272182(-) (recA) [Achromobacter sp. SS2-2022]
ATGGACGACAAAACCACCAAGGCCGCCGCTTCGGAAAAGGCCAAGGCGCTTGCCGCCGCGCTTTCCCAGATCGAAAAGCA
GTTCGGCAAGGGCTCGATCATGCGCTACGGCGATAACGAGGTCTCGCACGATATTCAGGTGGTTTCCACGGGCTCGTTGG
GTCTGGACATCGCGTTGGGTGTCGGCGGCTTGCCGCGCGGCCGCGTGATTGAAGTCTACGGCCCGGAATCGTCCGGTAAA
ACGACGCTGACGCTGCAAGTCATCGCCGAAATGCAGAAAATCGGCGGCACCTGCGCGTTCGTCGACGCCGAACACGCGCT
TGACGTCCAATACGCCAACAAGCTGGGCGTGAACCTGACCGACCTGCTGATCTCGCAGCCGGACACGGGCGAACAGGCGC
TGGAAATCACCGACGCGCTGGTGCGCTCGGGTTCGGTTGACCTGATCGTGATTGACTCGGTGGCGGCACTGGTGCCCAAG
GCTGAAATCGAAGGCGAAATGGGCGACTCCCTGCCGGGCCTGCAAGCCCGTCTGATGAGCCAGGCACTGCGCAAGCTGAC
CGCCACGATCAAGCGCACCAACTGCATGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTCATGTTCGGCAACC
CCGAAACCACCACCGGTGGCAACGCGCTGAAGTTCTACGCCTCGGTGCGTCTGGACATCCGCCGCATCGGCTCCATCAAG
AAGGGTGACGAGGTCGTCGGTAACGAAACCCGCGTCAAGGTCGTGAAGAACAAGGTGGCGCCGCCGTTCAAGCAGGCCGA
ATTCGACATCATGTATGGCGCCGGCATTTCGCGCGAAGGCGAAATCATCGATCTGGGCGTGGCCGCCAGCGTGGTGGACA
AATCTGGTGCGTGGTACAGCTACAACGGCAACCGCATCGGTCAGGGTAAGGACAACGTCCGCGAGTATCTGAAAGAGCAT
CGCGACATGGCCATCGAAATCGAAAACCGCGTTCGCGAGAACCAGGGCATCGTCAGCCGTGCCGCCGAGTTCGTGCCCAC
GGCGGAAGACACCGCTGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(15-277)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

80.966

99.717

0.807
  recA Pseudomonas stutzeri DSM 10701

71.554

96.601

0.691
  recA Acinetobacter baumannii D1279779

73.209

90.935

0.666
  recA Acinetobacter baylyi ADP1

68.915

96.601

0.666
  recA Vibrio cholerae strain A1552

72.897

90.935

0.663
  recA Vibrio cholerae O1 biovar El Tor strain E7946

72.897

90.935

0.663
  recA Neisseria gonorrhoeae MS11

71.037

92.918

0.66
  recA Neisseria gonorrhoeae MS11

71.037

92.918

0.66
  recA Neisseria gonorrhoeae strain FA1090

71.037

92.918

0.66
  recA Glaesserella parasuis strain SC1401

71.028

90.935

0.646
  recA Bacillus subtilis subsp. subtilis str. 168

65.138

92.635

0.603
  recA Latilactobacillus sakei subsp. sakei 23K

62.281

96.884

0.603
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.964

94.334

0.603
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.031

92.351

0.601
  recA Helicobacter pylori 26695

60.807

98.3

0.598
  recA Helicobacter pylori strain NCTC11637

60.519

98.3

0.595
  recA Streptococcus pneumoniae R6

58.824

96.317

0.567
  recA Streptococcus pneumoniae TIGR4

58.824

96.317

0.567
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.92

91.501

0.567
  recA Streptococcus pneumoniae Rx1

58.824

96.317

0.567
  recA Streptococcus pneumoniae D39

58.824

96.317

0.567
  recA Lactococcus lactis subsp. cremoris KW2

58.235

96.317

0.561
  recA Streptococcus mitis SK321

58.235

96.317

0.561
  recA Streptococcus mitis NCTC 12261

58.235

96.317

0.561
  recA Streptococcus pyogenes NZ131

58.806

94.901

0.558
  recA Streptococcus mutans UA159

56.471

96.317

0.544