Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | OGM29_RS06610 | Genome accession | NZ_CP107110 |
| Coordinates | 1409569..1410615 (+) | Length | 348 a.a. |
| NCBI ID | WP_003428218.1 | Uniprot ID | A0A031WFI0 |
| Organism | Clostridioides difficile strain R_cdtRstop8 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1377637..1459378 | 1409569..1410615 | within | 0 |
Gene organization within MGE regions
Location: 1377637..1459378
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OGM29_RS06475 (OGM29_06475) | - | 1378628..1379296 (-) | 669 | WP_009892970.1 | YwaF family protein | - |
| OGM29_RS06480 (OGM29_06480) | - | 1379565..1379705 (+) | 141 | WP_003419462.1 | hypothetical protein | - |
| OGM29_RS06485 (OGM29_06485) | - | 1379880..1380200 (-) | 321 | WP_003428248.1 | MazG-like family protein | - |
| OGM29_RS06490 (OGM29_06490) | - | 1380320..1381057 (-) | 738 | WP_003428245.1 | NAD-dependent protein deacylase | - |
| OGM29_RS06495 (OGM29_06495) | acd | 1381272..1383095 (+) | 1824 | WP_009892971.1 | N-acetylglucosaminidase | - |
| OGM29_RS06500 (OGM29_06500) | - | 1383310..1387608 (+) | 4299 | WP_009892973.1 | PolC-type DNA polymerase III | - |
| OGM29_RS06505 (OGM29_06505) | rimP | 1387812..1388273 (+) | 462 | WP_003438303.1 | ribosome maturation factor RimP | - |
| OGM29_RS06510 (OGM29_06510) | nusA | 1388303..1389457 (+) | 1155 | WP_009889093.1 | transcription termination factor NusA | - |
| OGM29_RS06515 (OGM29_06515) | rnpM | 1389464..1389745 (+) | 282 | WP_003419469.1 | RNase P modulator RnpM | - |
| OGM29_RS06520 (OGM29_06520) | - | 1389735..1390046 (+) | 312 | WP_003419470.1 | L7Ae/L30e/S12e/Gadd45 family ribosomal protein | - |
| OGM29_RS06525 (OGM29_06525) | infB | 1390068..1392008 (+) | 1941 | WP_003438306.1 | translation initiation factor IF-2 | - |
| OGM29_RS06530 (OGM29_06530) | rbfA | 1392051..1392431 (+) | 381 | WP_009889095.1 | 30S ribosome-binding factor RbfA | - |
| OGM29_RS06535 (OGM29_06535) | - | 1392412..1393395 (+) | 984 | WP_095890265.1 | DHH family phosphoesterase | - |
| OGM29_RS06540 (OGM29_06540) | truB | 1393408..1394313 (+) | 906 | WP_009889097.1 | tRNA pseudouridine(55) synthase TruB | - |
| OGM29_RS06545 (OGM29_06545) | - | 1394444..1395373 (+) | 930 | WP_009889098.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| OGM29_RS06550 (OGM29_06550) | rpsO | 1395477..1395734 (+) | 258 | WP_003419491.1 | 30S ribosomal protein S15 | - |
| OGM29_RS06555 (OGM29_06555) | - | 1395974..1396819 (+) | 846 | WP_009889099.1 | DegV family protein | - |
| OGM29_RS06560 (OGM29_06560) | pnp | 1396944..1399055 (+) | 2112 | WP_003438316.1 | polyribonucleotide nucleotidyltransferase | - |
| OGM29_RS06565 (OGM29_06565) | - | 1399321..1400064 (+) | 744 | WP_003438319.1 | polysaccharide deacetylase family protein | - |
| OGM29_RS06570 (OGM29_06570) | - | 1400222..1401469 (+) | 1248 | WP_009889101.1 | M16 family metallopeptidase | - |
| OGM29_RS06575 (OGM29_06575) | - | 1401504..1401749 (+) | 246 | WP_003419503.1 | YlmC/YmxH family sporulation protein | - |
| OGM29_RS06580 (OGM29_06580) | dapG | 1401759..1402982 (+) | 1224 | WP_009889103.1 | aspartate kinase | - |
| OGM29_RS06585 (OGM29_06585) | - | 1403095..1403829 (+) | 735 | WP_003428224.1 | ClpP family protease | - |
| OGM29_RS06590 (OGM29_06590) | - | 1403952..1406363 (+) | 2412 | WP_009889104.1 | FtsK/SpoIIIE family DNA translocase | - |
| OGM29_RS06595 (OGM29_06595) | mnmH | 1406366..1407424 (+) | 1059 | WP_009889105.1 | tRNA 2-selenouridine(34) synthase MnmH | - |
| OGM29_RS06600 (OGM29_06600) | rimO | 1407418..1408752 (+) | 1335 | WP_009892976.1 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| OGM29_RS06605 (OGM29_06605) | pgsA | 1408739..1409281 (+) | 543 | WP_009889106.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| OGM29_RS06610 (OGM29_06610) | recA | 1409569..1410615 (+) | 1047 | WP_003428218.1 | recombinase RecA | Machinery gene |
| OGM29_RS06615 (OGM29_06615) | rny | 1410791..1412332 (+) | 1542 | WP_003428216.1 | ribonuclease Y | - |
| OGM29_RS06620 (OGM29_06620) | - | 1412967..1414748 (+) | 1782 | WP_003438344.1 | UvrD-helicase domain-containing protein | - |
| OGM29_RS06625 (OGM29_06625) | lepB | 1414830..1415360 (-) | 531 | WP_009889108.1 | signal peptidase I | - |
| OGM29_RS06630 (OGM29_06630) | - | 1415400..1416224 (-) | 825 | WP_009889109.1 | undecaprenyl-diphosphate phosphatase | - |
| OGM29_RS06635 (OGM29_06635) | - | 1416481..1417389 (+) | 909 | WP_009889110.1 | tyrosine-type recombinase/integrase | - |
| OGM29_RS06640 (OGM29_06640) | purB | 1417533..1418978 (+) | 1446 | WP_009889111.1 | adenylosuccinate lyase | - |
| OGM29_RS06645 (OGM29_06645) | - | 1419289..1419741 (+) | 453 | WP_003419561.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| OGM29_RS06650 (OGM29_06650) | - | 1420154..1421731 (+) | 1578 | WP_009889112.1 | PTS transporter subunit EIIC | - |
| OGM29_RS06655 (OGM29_06655) | - | 1421890..1422642 (+) | 753 | WP_009892977.1 | MurR/RpiR family transcriptional regulator | - |
| OGM29_RS06660 (OGM29_06660) | - | 1422775..1424121 (+) | 1347 | WP_009892979.1 | 6-phospho-alpha-glucosidase | - |
| OGM29_RS06665 (OGM29_06665) | - | 1424233..1425429 (-) | 1197 | WP_003438357.1 | pyridoxal phosphate-dependent aminotransferase | - |
| OGM29_RS06670 (OGM29_06670) | galT | 1425814..1426764 (+) | 951 | WP_009889113.1 | galactose-1-phosphate uridylyltransferase | - |
| OGM29_RS06675 (OGM29_06675) | - | 1426925..1427677 (+) | 753 | WP_003438367.1 | exodeoxyribonuclease III | - |
| OGM29_RS06680 (OGM29_06680) | - | 1427769..1428545 (-) | 777 | WP_009889114.1 | 3'-5' exonuclease | - |
| OGM29_RS06685 (OGM29_06685) | - | 1428860..1430758 (+) | 1899 | WP_003428202.1 | glutamine synthetase | - |
| OGM29_RS06690 (OGM29_06690) | - | 1430886..1432007 (-) | 1122 | WP_003428201.1 | MGDG synthase family glycosyltransferase | - |
| OGM29_RS06695 (OGM29_06695) | - | 1432206..1432538 (+) | 333 | WP_009889116.1 | PadR family transcriptional regulator | - |
| OGM29_RS06700 (OGM29_06700) | - | 1432525..1433583 (+) | 1059 | WP_012816112.1 | DUF1700 domain-containing protein | - |
| OGM29_RS06705 (OGM29_06705) | - | 1433576..1434646 (+) | 1071 | WP_009889118.1 | DUF4097 family beta strand repeat-containing protein | - |
| OGM29_RS06710 (OGM29_06710) | - | 1434748..1435284 (+) | 537 | WP_003428196.1 | lipoprotein | - |
| OGM29_RS06715 (OGM29_06715) | - | 1435401..1436108 (+) | 708 | WP_009889121.1 | lantibiotic protection ABC transporter ATP-binding protein | - |
| OGM29_RS06720 (OGM29_06720) | - | 1436110..1436826 (+) | 717 | WP_009889122.1 | lantibiotic immunity ABC transporter MutE/EpiE family permease subunit | - |
| OGM29_RS06725 (OGM29_06725) | - | 1436828..1437586 (+) | 759 | WP_009889124.1 | lantibiotic immunity ABC transporter MutG family permease subunit | - |
| OGM29_RS06730 (OGM29_06730) | - | 1437730..1439118 (+) | 1389 | WP_009889126.1 | two-component system sensor histidine kinase | - |
| OGM29_RS06735 (OGM29_06735) | - | 1439194..1440015 (-) | 822 | WP_003428191.1 | pyridoxamine kinase | - |
| OGM29_RS06740 (OGM29_06740) | - | 1440266..1441420 (+) | 1155 | WP_009892989.1 | amidase domain-containing protein | - |
| OGM29_RS06745 (OGM29_06745) | - | 1441603..1441803 (+) | 201 | WP_003419624.1 | cold-shock protein | - |
| OGM29_RS06750 (OGM29_06750) | - | 1442224..1442652 (+) | 429 | WP_009889129.1 | CBS domain-containing protein | - |
| OGM29_RS06755 (OGM29_06755) | - | 1442795..1443550 (-) | 756 | WP_009889131.1 | peptidylprolyl isomerase | - |
| OGM29_RS06760 (OGM29_06760) | - | 1444251..1444757 (-) | 507 | WP_003428186.1 | ImmA/IrrE family metallo-endopeptidase | - |
| OGM29_RS06765 (OGM29_06765) | - | 1444839..1445159 (-) | 321 | WP_003428185.1 | XRE family transcriptional regulator | - |
| OGM29_RS06770 (OGM29_06770) | - | 1445328..1445525 (+) | 198 | WP_003419641.1 | helix-turn-helix transcriptional regulator | - |
| OGM29_RS06775 (OGM29_06775) | - | 1445630..1446070 (+) | 441 | WP_009889133.1 | hypothetical protein | - |
| OGM29_RS06780 (OGM29_06780) | - | 1446319..1446762 (+) | 444 | WP_009889135.1 | phage tail terminator family protein | - |
| OGM29_RS06785 (OGM29_06785) | - | 1446767..1447831 (+) | 1065 | WP_009889137.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| OGM29_RS06790 (OGM29_06790) | - | 1447845..1448273 (+) | 429 | WP_003419646.1 | phage tail tube protein | - |
| OGM29_RS06795 (OGM29_06795) | - | 1448387..1448833 (+) | 447 | WP_009889139.1 | phage tail assembly chaperone | - |
| OGM29_RS06800 (OGM29_06800) | - | 1448860..1449027 (+) | 168 | WP_003419648.1 | hypothetical protein | - |
| OGM29_RS06805 (OGM29_06805) | - | 1449027..1451480 (+) | 2454 | WP_009889141.1 | hypothetical protein | - |
| OGM29_RS06810 (OGM29_06810) | - | 1451480..1451902 (+) | 423 | WP_009889143.1 | phage baseplate protein | - |
| OGM29_RS06815 (OGM29_06815) | - | 1452184..1453713 (+) | 1530 | WP_009889145.1 | NlpC/P60 family protein | - |
| OGM29_RS06820 (OGM29_06820) | - | 1453729..1454055 (+) | 327 | WP_003438447.1 | DUF2577 domain-containing protein | - |
| OGM29_RS06825 (OGM29_06825) | - | 1454055..1454483 (+) | 429 | WP_003428161.1 | DUF2634 domain-containing protein | - |
| OGM29_RS06830 (OGM29_06830) | - | 1454476..1455528 (+) | 1053 | WP_009889148.1 | baseplate J/gp47 family protein | - |
| OGM29_RS06835 (OGM29_06835) | - | 1455525..1456223 (+) | 699 | WP_009889149.1 | putative phage tail protein | - |
| OGM29_RS06840 (OGM29_06840) | - | 1456224..1457210 (+) | 987 | WP_009889153.1 | phage tail protein | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37377.68 Da Isoelectric Point: 4.8236
>NTDB_id=738026 OGM29_RS06610 WP_003428218.1 1409569..1410615(+) (recA) [Clostridioides difficile strain R_cdtRstop8]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=738026 OGM29_RS06610 WP_003428218.1 1409569..1410615(+) (recA) [Clostridioides difficile strain R_cdtRstop8]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
Similar proteins
Only experimentally validated proteins are listed.