Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | OGM26_RS06840 | Genome accession | NZ_CP107108 |
| Coordinates | 1437685..1438731 (+) | Length | 348 a.a. |
| NCBI ID | WP_003428218.1 | Uniprot ID | A0A031WFI0 |
| Organism | Clostridioides difficile strain R_phiCD75-3 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1405753..1487494 | 1437685..1438731 | within | 0 |
Gene organization within MGE regions
Location: 1405753..1487494
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OGM26_RS06705 (OGM26_06705) | - | 1406744..1407412 (-) | 669 | WP_009892970.1 | YwaF family protein | - |
| OGM26_RS06710 (OGM26_06710) | - | 1407681..1407821 (+) | 141 | WP_003419462.1 | hypothetical protein | - |
| OGM26_RS06715 (OGM26_06715) | - | 1407996..1408316 (-) | 321 | WP_003428248.1 | MazG-like family protein | - |
| OGM26_RS06720 (OGM26_06720) | - | 1408436..1409173 (-) | 738 | WP_003428245.1 | NAD-dependent protein deacylase | - |
| OGM26_RS06725 (OGM26_06725) | acd | 1409388..1411211 (+) | 1824 | WP_009892971.1 | N-acetylglucosaminidase | - |
| OGM26_RS06730 (OGM26_06730) | - | 1411426..1415724 (+) | 4299 | WP_009892973.1 | PolC-type DNA polymerase III | - |
| OGM26_RS06735 (OGM26_06735) | rimP | 1415928..1416389 (+) | 462 | WP_003438303.1 | ribosome maturation factor RimP | - |
| OGM26_RS06740 (OGM26_06740) | nusA | 1416419..1417573 (+) | 1155 | WP_009889093.1 | transcription termination factor NusA | - |
| OGM26_RS06745 (OGM26_06745) | rnpM | 1417580..1417861 (+) | 282 | WP_003419469.1 | RNase P modulator RnpM | - |
| OGM26_RS06750 (OGM26_06750) | - | 1417851..1418162 (+) | 312 | WP_003419470.1 | L7Ae/L30e/S12e/Gadd45 family ribosomal protein | - |
| OGM26_RS06755 (OGM26_06755) | infB | 1418184..1420124 (+) | 1941 | WP_003438306.1 | translation initiation factor IF-2 | - |
| OGM26_RS06760 (OGM26_06760) | rbfA | 1420167..1420547 (+) | 381 | WP_009889095.1 | 30S ribosome-binding factor RbfA | - |
| OGM26_RS06765 (OGM26_06765) | - | 1420528..1421511 (+) | 984 | WP_095890265.1 | DHH family phosphoesterase | - |
| OGM26_RS06770 (OGM26_06770) | truB | 1421524..1422429 (+) | 906 | WP_009889097.1 | tRNA pseudouridine(55) synthase TruB | - |
| OGM26_RS06775 (OGM26_06775) | - | 1422560..1423489 (+) | 930 | WP_009889098.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| OGM26_RS06780 (OGM26_06780) | rpsO | 1423593..1423850 (+) | 258 | WP_003419491.1 | 30S ribosomal protein S15 | - |
| OGM26_RS06785 (OGM26_06785) | - | 1424090..1424935 (+) | 846 | WP_009889099.1 | DegV family protein | - |
| OGM26_RS06790 (OGM26_06790) | pnp | 1425060..1427171 (+) | 2112 | WP_003438316.1 | polyribonucleotide nucleotidyltransferase | - |
| OGM26_RS06795 (OGM26_06795) | - | 1427437..1428180 (+) | 744 | WP_003438319.1 | polysaccharide deacetylase family protein | - |
| OGM26_RS06800 (OGM26_06800) | - | 1428338..1429585 (+) | 1248 | WP_009889101.1 | M16 family metallopeptidase | - |
| OGM26_RS06805 (OGM26_06805) | - | 1429620..1429865 (+) | 246 | WP_003419503.1 | YlmC/YmxH family sporulation protein | - |
| OGM26_RS06810 (OGM26_06810) | dapG | 1429875..1431098 (+) | 1224 | WP_009889103.1 | aspartate kinase | - |
| OGM26_RS06815 (OGM26_06815) | - | 1431211..1431945 (+) | 735 | WP_003428224.1 | ClpP family protease | - |
| OGM26_RS06820 (OGM26_06820) | - | 1432068..1434479 (+) | 2412 | WP_009889104.1 | FtsK/SpoIIIE family DNA translocase | - |
| OGM26_RS06825 (OGM26_06825) | mnmH | 1434482..1435540 (+) | 1059 | WP_009889105.1 | tRNA 2-selenouridine(34) synthase MnmH | - |
| OGM26_RS06830 (OGM26_06830) | rimO | 1435534..1436868 (+) | 1335 | WP_009892976.1 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| OGM26_RS06835 (OGM26_06835) | pgsA | 1436855..1437397 (+) | 543 | WP_009889106.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| OGM26_RS06840 (OGM26_06840) | recA | 1437685..1438731 (+) | 1047 | WP_003428218.1 | recombinase RecA | Machinery gene |
| OGM26_RS06845 (OGM26_06845) | rny | 1438907..1440448 (+) | 1542 | WP_003428216.1 | ribonuclease Y | - |
| OGM26_RS06850 (OGM26_06850) | - | 1441083..1442864 (+) | 1782 | WP_003438344.1 | UvrD-helicase domain-containing protein | - |
| OGM26_RS06855 (OGM26_06855) | lepB | 1442946..1443476 (-) | 531 | WP_009889108.1 | signal peptidase I | - |
| OGM26_RS06860 (OGM26_06860) | - | 1443516..1444340 (-) | 825 | WP_009889109.1 | undecaprenyl-diphosphate phosphatase | - |
| OGM26_RS06865 (OGM26_06865) | - | 1444597..1445505 (+) | 909 | WP_009889110.1 | tyrosine-type recombinase/integrase | - |
| OGM26_RS06870 (OGM26_06870) | purB | 1445649..1447094 (+) | 1446 | WP_009889111.1 | adenylosuccinate lyase | - |
| OGM26_RS06875 (OGM26_06875) | - | 1447405..1447857 (+) | 453 | WP_003419561.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| OGM26_RS06880 (OGM26_06880) | - | 1448270..1449847 (+) | 1578 | WP_009889112.1 | PTS transporter subunit EIIC | - |
| OGM26_RS06885 (OGM26_06885) | - | 1450006..1450758 (+) | 753 | WP_009892977.1 | MurR/RpiR family transcriptional regulator | - |
| OGM26_RS06890 (OGM26_06890) | - | 1450891..1452237 (+) | 1347 | WP_009892979.1 | 6-phospho-alpha-glucosidase | - |
| OGM26_RS06895 (OGM26_06895) | - | 1452349..1453545 (-) | 1197 | WP_003438357.1 | pyridoxal phosphate-dependent aminotransferase | - |
| OGM26_RS06900 (OGM26_06900) | galT | 1453930..1454880 (+) | 951 | WP_009889113.1 | galactose-1-phosphate uridylyltransferase | - |
| OGM26_RS06905 (OGM26_06905) | - | 1455041..1455793 (+) | 753 | WP_003438367.1 | exodeoxyribonuclease III | - |
| OGM26_RS06910 (OGM26_06910) | - | 1455885..1456661 (-) | 777 | WP_009889114.1 | 3'-5' exonuclease | - |
| OGM26_RS06915 (OGM26_06915) | - | 1456976..1458874 (+) | 1899 | WP_003428202.1 | glutamine synthetase | - |
| OGM26_RS06920 (OGM26_06920) | - | 1459002..1460123 (-) | 1122 | WP_003428201.1 | MGDG synthase family glycosyltransferase | - |
| OGM26_RS06925 (OGM26_06925) | - | 1460322..1460654 (+) | 333 | WP_009889116.1 | PadR family transcriptional regulator | - |
| OGM26_RS06930 (OGM26_06930) | - | 1460641..1461699 (+) | 1059 | WP_012816112.1 | DUF1700 domain-containing protein | - |
| OGM26_RS06935 (OGM26_06935) | - | 1461692..1462762 (+) | 1071 | WP_009889118.1 | DUF4097 family beta strand repeat-containing protein | - |
| OGM26_RS06940 (OGM26_06940) | - | 1462864..1463400 (+) | 537 | WP_003428196.1 | lipoprotein | - |
| OGM26_RS06945 (OGM26_06945) | - | 1463517..1464224 (+) | 708 | WP_009889121.1 | lantibiotic protection ABC transporter ATP-binding protein | - |
| OGM26_RS06950 (OGM26_06950) | - | 1464226..1464942 (+) | 717 | WP_009889122.1 | lantibiotic immunity ABC transporter MutE/EpiE family permease subunit | - |
| OGM26_RS06955 (OGM26_06955) | - | 1464944..1465702 (+) | 759 | WP_009889124.1 | lantibiotic immunity ABC transporter MutG family permease subunit | - |
| OGM26_RS06960 (OGM26_06960) | - | 1465846..1467234 (+) | 1389 | WP_009889126.1 | two-component system sensor histidine kinase | - |
| OGM26_RS06965 (OGM26_06965) | - | 1467310..1468131 (-) | 822 | WP_003428191.1 | pyridoxamine kinase | - |
| OGM26_RS06970 (OGM26_06970) | - | 1468382..1469536 (+) | 1155 | WP_009892989.1 | amidase domain-containing protein | - |
| OGM26_RS06975 (OGM26_06975) | - | 1469719..1469919 (+) | 201 | WP_003419624.1 | cold-shock protein | - |
| OGM26_RS06980 (OGM26_06980) | - | 1470340..1470768 (+) | 429 | WP_009889129.1 | CBS domain-containing protein | - |
| OGM26_RS06985 (OGM26_06985) | - | 1470911..1471666 (-) | 756 | WP_009889131.1 | peptidylprolyl isomerase | - |
| OGM26_RS06990 (OGM26_06990) | - | 1472367..1472873 (-) | 507 | WP_003428186.1 | ImmA/IrrE family metallo-endopeptidase | - |
| OGM26_RS06995 (OGM26_06995) | - | 1472955..1473275 (-) | 321 | WP_003428185.1 | XRE family transcriptional regulator | - |
| OGM26_RS07000 (OGM26_07000) | - | 1473444..1473641 (+) | 198 | WP_003419641.1 | helix-turn-helix transcriptional regulator | - |
| OGM26_RS07005 (OGM26_07005) | - | 1473746..1474186 (+) | 441 | WP_009889133.1 | hypothetical protein | - |
| OGM26_RS07010 (OGM26_07010) | - | 1474435..1474878 (+) | 444 | WP_009889135.1 | phage tail terminator family protein | - |
| OGM26_RS07015 (OGM26_07015) | - | 1474883..1475947 (+) | 1065 | WP_009889137.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| OGM26_RS07020 (OGM26_07020) | - | 1475961..1476389 (+) | 429 | WP_003419646.1 | phage tail tube protein | - |
| OGM26_RS07025 (OGM26_07025) | - | 1476503..1476949 (+) | 447 | WP_009889139.1 | phage tail assembly chaperone | - |
| OGM26_RS07030 (OGM26_07030) | - | 1476976..1477143 (+) | 168 | WP_003419648.1 | hypothetical protein | - |
| OGM26_RS07035 (OGM26_07035) | - | 1477143..1479596 (+) | 2454 | WP_009889141.1 | hypothetical protein | - |
| OGM26_RS07040 (OGM26_07040) | - | 1479596..1480018 (+) | 423 | WP_009889143.1 | phage baseplate protein | - |
| OGM26_RS07045 (OGM26_07045) | - | 1480300..1481829 (+) | 1530 | WP_009889145.1 | NlpC/P60 family protein | - |
| OGM26_RS07050 (OGM26_07050) | - | 1481845..1482171 (+) | 327 | WP_003438447.1 | DUF2577 domain-containing protein | - |
| OGM26_RS07055 (OGM26_07055) | - | 1482171..1482599 (+) | 429 | WP_003428161.1 | DUF2634 domain-containing protein | - |
| OGM26_RS07060 (OGM26_07060) | - | 1482592..1483644 (+) | 1053 | WP_009889148.1 | baseplate J/gp47 family protein | - |
| OGM26_RS07065 (OGM26_07065) | - | 1483641..1484339 (+) | 699 | WP_009889149.1 | putative phage tail protein | - |
| OGM26_RS07070 (OGM26_07070) | - | 1484340..1485326 (+) | 987 | WP_009889153.1 | phage tail protein | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37377.68 Da Isoelectric Point: 4.8236
>NTDB_id=737992 OGM26_RS06840 WP_003428218.1 1437685..1438731(+) (recA) [Clostridioides difficile strain R_phiCD75-3]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=737992 OGM26_RS06840 WP_003428218.1 1437685..1438731(+) (recA) [Clostridioides difficile strain R_phiCD75-3]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
Similar proteins
Only experimentally validated proteins are listed.