Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ODE14_RS17220 Genome accession   NZ_CP107053
Coordinates   3791652..3792653 (-) Length   333 a.a.
NCBI ID   WP_248394893.1    Uniprot ID   -
Organism   Chryseobacterium sp. PET-29     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3786652..3797653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ODE14_RS17195 - 3786887..3787528 (+) 642 WP_263602290.1 hypothetical protein -
  ODE14_RS17200 - 3787555..3788529 (+) 975 WP_169232222.1 deoxyhypusine synthase family protein -
  ODE14_RS17205 - 3788755..3788901 (-) 147 WP_263602291.1 hypothetical protein -
  ODE14_RS17210 - 3789152..3789448 (+) 297 WP_248394895.1 MGMT family protein -
  ODE14_RS17215 htpG 3789553..3791445 (-) 1893 WP_263602292.1 molecular chaperone HtpG -
  ODE14_RS17220 recA 3791652..3792653 (-) 1002 WP_248394893.1 recombinase RecA Machinery gene
  ODE14_RS17225 - 3792845..3794041 (-) 1197 WP_263602293.1 oxygenase MpaB family protein -
  ODE14_RS17230 - 3794175..3794978 (+) 804 WP_263602294.1 hypothetical protein -
  ODE14_RS17235 gap 3795038..3796042 (-) 1005 WP_248394890.1 type I glyceraldehyde-3-phosphate dehydrogenase -
  ODE14_RS17240 pfkA 3796072..3797058 (-) 987 WP_248394889.1 6-phosphofructokinase -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 35763.97 Da        Isoelectric Point: 5.5653

>NTDB_id=737763 ODE14_RS17220 WP_248394893.1 3791652..3792653(-) (recA) [Chryseobacterium sp. PET-29]
MSNIDDKKKALALVLDKLDKTYGKGTVMTLGDSSVDSTIEVIPSGSLGLDIALGVGGYPRGRIIEIYGPESSGKTTLTLH
AIAEAQKAGGIAAFIDAEHAFDRGYAGKLGIDLENLIISQPDNGEQALEIADNLIRSGAIDIVVIDSVAALTPKAEIEGE
MGDSKMGLHARLMSQALRKLTATISRTKCTVIFINQLREKIGVMFGNPETTTGGNALKFYASVRVDIRKASAPIKQGDEA
IGSRVKVKIVKNKVAPPFKQAEFDIMYGEGVSKTGEILDQAVEQGIVKKSGSWFSYEDTKLGQGRDAVKDVLKDNPELAE
ELENKIKEELKNK

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=737763 ODE14_RS17220 WP_248394893.1 3791652..3792653(-) (recA) [Chryseobacterium sp. PET-29]
ATGAGTAATATAGACGACAAGAAAAAAGCACTGGCACTGGTGCTTGACAAGCTAGATAAAACATACGGAAAAGGAACGGT
AATGACATTGGGCGACAGCTCTGTGGACAGTACCATTGAAGTAATTCCTTCCGGATCTTTGGGATTAGACATTGCTTTAG
GAGTGGGTGGCTACCCGAGAGGAAGAATCATTGAGATCTATGGTCCTGAATCTTCCGGTAAAACAACATTAACTCTTCAT
GCGATTGCAGAAGCTCAGAAAGCAGGAGGAATTGCCGCATTTATTGATGCAGAGCATGCTTTTGACAGAGGATATGCCGG
AAAACTGGGTATCGATCTTGAAAACCTGATCATTTCACAGCCGGACAACGGTGAGCAGGCTTTGGAAATTGCTGATAATC
TGATCCGTTCTGGAGCAATTGACATTGTGGTTATCGACTCTGTAGCAGCTCTTACCCCAAAGGCTGAAATTGAAGGAGAA
ATGGGAGATTCTAAAATGGGTCTTCACGCAAGATTAATGTCTCAGGCTTTGAGAAAATTAACAGCGACGATTTCCAGAAC
AAAATGTACGGTAATTTTCATCAACCAGCTGAGAGAAAAAATCGGGGTGATGTTTGGGAATCCTGAAACGACAACCGGAG
GTAACGCTTTGAAATTTTATGCTTCTGTAAGAGTGGATATCAGAAAAGCGAGTGCGCCAATCAAACAAGGTGACGAAGCT
ATCGGAAGCCGTGTAAAAGTAAAAATTGTGAAAAACAAAGTAGCACCACCTTTCAAACAGGCAGAATTCGACATTATGTA
TGGTGAAGGAGTTTCTAAAACAGGGGAAATTCTTGATCAGGCTGTAGAACAGGGAATTGTTAAGAAAAGCGGATCATGGT
TCAGCTATGAAGATACAAAGCTCGGACAAGGCCGTGATGCGGTAAAAGATGTGTTGAAAGACAATCCTGAACTTGCGGAA
GAACTTGAAAATAAAATCAAGGAAGAATTGAAAAACAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

80.48

100

0.805
  recA Acinetobacter baylyi ADP1

64.742

98.799

0.64
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.832

98.198

0.637
  recA Acinetobacter baumannii D1279779

64.724

97.898

0.634
  recA Glaesserella parasuis strain SC1401

64.11

97.898

0.628
  recA Ralstonia pseudosolanacearum GMI1000

66.454

93.994

0.625
  recA Helicobacter pylori strain NCTC11637

63.303

98.198

0.622
  recA Helicobacter pylori 26695

63.303

98.198

0.622
  recA Neisseria gonorrhoeae strain FA1090

63.467

96.997

0.616
  recA Neisseria gonorrhoeae MS11

63.467

96.997

0.616
  recA Neisseria gonorrhoeae MS11

63.467

96.997

0.616
  recA Bacillus subtilis subsp. subtilis str. 168

62.577

97.898

0.613
  recA Pseudomonas stutzeri DSM 10701

61.656

97.898

0.604
  recA Streptococcus mitis SK321

60.736

97.898

0.595
  recA Streptococcus mitis NCTC 12261

60.736

97.898

0.595
  recA Streptococcus pyogenes NZ131

60.245

98.198

0.592
  recA Vibrio cholerae strain A1552

60.061

98.498

0.592
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.061

98.498

0.592
  recA Lactococcus lactis subsp. cremoris KW2

60.429

97.898

0.592
  recA Latilactobacillus sakei subsp. sakei 23K

60.062

96.997

0.583
  recA Streptococcus mutans UA159

59.327

98.198

0.583
  recA Streptococcus pneumoniae TIGR4

58.841

98.498

0.58
  recA Streptococcus pneumoniae R6

58.841

98.498

0.58
  recA Streptococcus pneumoniae Rx1

58.841

98.498

0.58
  recA Streptococcus pneumoniae D39

58.841

98.498

0.58
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.748

97.898

0.556