Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CT3_RS20495 Genome accession   NZ_AP019749
Coordinates   4528714..4529832 (+) Length   372 a.a.
NCBI ID   WP_066538084.1    Uniprot ID   -
Organism   Comamonas terrigena NBRC 13299     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4523714..4534832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CT3_RS20475 (CT3_40360) - 4524526..4525485 (+) 960 WP_066538388.1 LysR substrate-binding domain-containing protein -
  CT3_RS20480 (CT3_40370) - 4525544..4526995 (-) 1452 WP_066538071.1 sensor histidine kinase N-terminal domain-containing protein -
  CT3_RS20485 (CT3_40380) - 4527099..4527773 (-) 675 WP_066538078.1 response regulator transcription factor -
  CT3_RS20490 (CT3_40390) - 4528062..4528565 (-) 504 WP_066538081.1 MarR family winged helix-turn-helix transcriptional regulator -
  CT3_RS20495 (CT3_40400) recA 4528714..4529832 (+) 1119 WP_066538084.1 recombinase RecA Machinery gene
  CT3_RS20500 (CT3_40410) recX 4530012..4530473 (+) 462 WP_066538087.1 recombination regulator RecX -
  CT3_RS20505 (CT3_40420) - 4530505..4531731 (-) 1227 WP_066538090.1 DUF4010 domain-containing protein -
  CT3_RS20510 (CT3_40430) yddG 4531798..4532736 (-) 939 WP_066538091.1 aromatic amino acid DMT transporter YddG -
  CT3_RS20515 (CT3_40440) cycA 4532953..4534404 (-) 1452 WP_066538093.1 D-serine/D-alanine/glycine transporter -

Sequence

Protein


Download         Length: 372 a.a.        Molecular weight: 39290.05 Da        Isoelectric Point: 5.2086

>NTDB_id=73776 CT3_RS20495 WP_066538084.1 4528714..4529832(+) (recA) [Comamonas terrigena NBRC 13299]
MNAIAAKSADANSEKAKALAAALAQIEKQFGKGTIMKLGEGEAAQDIQVVSTGSLGLDIALGVGGLPRGRVIEIYGPESS
GKTTLTLQVIAEMQKQGGTCAFIDAEHALDTGYAQKLGVNLSEVLISQPDTGEQALEICDSLVRSGAVDLIVIDSVAALT
PKAEIEGEMGDQLPGLQARLMSQALRKLTATIKKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGT
IKKGDEAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGEILDMGVNAKILEKSGAWYAYNGEKIGQGRDNSREFLR
ENPALAVEIENKVRDSLGIALLPVAAGEDAAKPAKGKKGDKNATVDEDGVIG

Nucleotide


Download         Length: 1119 bp        

>NTDB_id=73776 CT3_RS20495 WP_066538084.1 4528714..4529832(+) (recA) [Comamonas terrigena NBRC 13299]
ATGAACGCCATTGCCGCCAAGTCCGCCGACGCCAACAGCGAAAAAGCCAAGGCACTTGCTGCCGCCCTCGCCCAGATCGA
AAAGCAATTCGGCAAAGGCACCATCATGAAGCTGGGCGAAGGCGAAGCGGCCCAGGACATCCAGGTGGTGTCCACCGGCT
CGCTGGGCCTGGACATCGCTCTGGGCGTGGGCGGCCTGCCCCGCGGCCGCGTGATCGAAATCTACGGCCCGGAATCCTCG
GGCAAGACCACGCTGACGCTGCAGGTCATTGCCGAGATGCAAAAGCAAGGCGGCACCTGCGCCTTCATCGACGCCGAACA
TGCACTGGACACCGGCTACGCCCAGAAGCTGGGTGTGAACCTGAGCGAAGTGCTGATCAGCCAGCCCGACACCGGTGAGC
AGGCGCTGGAAATCTGCGACAGCCTGGTGCGCTCCGGCGCCGTGGACCTGATCGTGATCGACTCGGTCGCCGCGCTGACC
CCCAAGGCCGAAATCGAAGGCGAAATGGGCGACCAGCTGCCCGGTCTGCAGGCCCGCCTGATGAGCCAGGCACTGCGCAA
GCTGACCGCCACCATCAAGAAGACCAACTGCATGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGTGTGATGTTCG
GCTCGCCCGAAACCACCACCGGCGGTAACGCGCTGAAGTTCTACGCCTCGGTGCGCCTGGACATCCGCCGCACCGGCACC
ATCAAGAAGGGCGACGAAGCCATCGGTAACGAAACCAAGGTCAAGGTCGTCAAGAACAAGGTTTCGCCTCCGTTCAAGAC
CGCCGAGTTCGACATTCTGTTCGGTGAAGGCATCAGCCGCGAAGGCGAGATCCTGGACATGGGCGTGAACGCCAAGATCC
TGGAAAAGTCCGGCGCCTGGTATGCCTACAACGGCGAGAAGATCGGCCAGGGCCGCGACAACTCGCGTGAATTCCTGCGC
GAGAACCCCGCACTGGCCGTGGAAATCGAGAACAAGGTGCGCGACAGCCTGGGCATTGCCCTGCTGCCCGTGGCCGCCGG
CGAAGACGCCGCCAAGCCCGCCAAGGGCAAGAAAGGCGACAAGAACGCCACGGTGGATGAAGACGGCGTGATCGGCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(17-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

81.982

89.516

0.734
  recA Neisseria gonorrhoeae strain FA1090

70.606

88.71

0.626
  recA Neisseria gonorrhoeae MS11

70.606

88.71

0.626
  recA Neisseria gonorrhoeae MS11

70.606

88.71

0.626
  recA Pseudomonas stutzeri DSM 10701

71.166

87.634

0.624
  recA Glaesserella parasuis strain SC1401

71.605

87.097

0.624
  recA Acinetobacter baylyi ADP1

69.939

87.634

0.613
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.939

87.634

0.613
  recA Acinetobacter baumannii D1279779

69.939

87.634

0.613
  recA Vibrio cholerae strain A1552

69.939

87.634

0.613
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

67.674

88.978

0.602
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.869

88.441

0.591
  recA Bacillus subtilis subsp. subtilis str. 168

64.526

87.903

0.567
  recA Streptococcus mitis SK321

58.659

96.237

0.565
  recA Helicobacter pylori strain NCTC11637

64.024

88.172

0.565
  recA Helicobacter pylori 26695

64.024

88.172

0.565
  recA Streptococcus mutans UA159

57.3

97.581

0.559
  recA Latilactobacillus sakei subsp. sakei 23K

61.862

89.516

0.554
  recA Lactococcus lactis subsp. cremoris KW2

61.934

88.978

0.551
  recA Streptococcus pyogenes NZ131

62.006

88.441

0.548
  recA Streptococcus pneumoniae D39

61.027

88.978

0.543
  recA Streptococcus pneumoniae Rx1

61.027

88.978

0.543
  recA Streptococcus pneumoniae R6

61.027

88.978

0.543
  recA Streptococcus pneumoniae TIGR4

61.027

88.978

0.543
  recA Streptococcus mitis NCTC 12261

60.725

88.978

0.54
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.059

86.29

0.527

Multiple sequence alignment