Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   OCT51_RS02935 Genome accession   NZ_CP107009
Coordinates   637535..638599 (+) Length   354 a.a.
NCBI ID   WP_263582411.1    Uniprot ID   -
Organism   Halomonas sp. LR3S48     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 632535..643599
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCT51_RS02920 (OCT51_02920) fdxA 633550..633873 (-) 324 WP_111412930.1 ferredoxin FdxA -
  OCT51_RS02925 (OCT51_02925) mutS 634038..636626 (-) 2589 WP_263582409.1 DNA mismatch repair protein MutS -
  OCT51_RS02930 (OCT51_02930) - 636874..637386 (+) 513 WP_263582410.1 CinA family protein -
  OCT51_RS02935 (OCT51_02935) recA 637535..638599 (+) 1065 WP_263582411.1 recombinase RecA Machinery gene
  OCT51_RS02940 (OCT51_02940) - 638603..639082 (+) 480 WP_263582412.1 regulatory protein RecX -
  OCT51_RS02945 (OCT51_02945) alaS 639258..641867 (+) 2610 WP_263582413.1 alanine--tRNA ligase -
  OCT51_RS02950 (OCT51_02950) - 641970..643220 (+) 1251 WP_263582414.1 aspartate kinase -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 37987.35 Da        Isoelectric Point: 4.9334

>NTDB_id=737332 OCT51_RS02935 WP_263582411.1 637535..638599(+) (recA) [Halomonas sp. LR3S48]
MAQDENRSKALNAALSQIERQFGKGTVMRLGDTPRVVMPSVSTGSLGLDIALGIGGLPYGRVVEIFGPESSGKTTLTLSV
IAQAQKQGKTCAFIDAEHALDPSYAEKLGVNLDDLLVSQPDTGEQALEICDMLVRSGGVDVIIIDSVAALTPRAEIEGEM
GDSHVGLQARLMSQALRKITGHIKNANCMVVFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGSVKQGDEVTG
NETRVKVVKNKVAPPFRQAEFQILYGKGIYHAGEVVDLGVQCNLIDKAGAWYSYKGNKIGQGKANAAQFLEDNPAVMEEI
ESQIRGQLLATVAPKEEEAGEPVAVEAEREDDLL

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=737332 OCT51_RS02935 WP_263582411.1 637535..638599(+) (recA) [Halomonas sp. LR3S48]
ATGGCACAGGATGAAAACCGTTCCAAGGCATTGAATGCCGCCCTTTCCCAGATCGAGCGCCAGTTCGGCAAGGGTACCGT
GATGCGCCTGGGCGATACGCCGCGGGTGGTGATGCCGTCGGTGTCCACCGGCTCGCTGGGGCTCGACATCGCGCTCGGTA
TCGGTGGCCTGCCCTACGGCCGCGTGGTGGAGATCTTCGGTCCGGAATCCTCGGGCAAGACCACCCTGACCCTGTCGGTC
ATTGCCCAGGCCCAGAAGCAGGGCAAGACCTGCGCCTTCATCGACGCCGAGCACGCGCTCGACCCGAGCTATGCCGAAAA
GCTCGGCGTCAACCTCGACGATCTGCTTGTCTCGCAGCCGGATACCGGCGAGCAGGCGCTGGAGATCTGCGACATGCTGG
TGCGCTCCGGTGGTGTCGACGTGATCATCATCGACTCGGTGGCGGCCCTCACCCCGCGCGCCGAGATCGAGGGCGAGATG
GGCGATTCCCACGTCGGCCTGCAGGCGCGCCTGATGTCCCAGGCGCTGCGCAAGATCACCGGTCACATCAAGAACGCCAA
CTGCATGGTGGTGTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGTAGCCCCGAGACCACCACCGGCGGCA
ATGCGCTCAAGTTCTACGCCAGCGTGCGCCTGGACATCCGGCGCACCGGCTCGGTGAAGCAGGGCGACGAGGTCACCGGC
AACGAGACCCGCGTCAAGGTGGTGAAGAACAAGGTGGCCCCGCCGTTCCGTCAGGCCGAGTTCCAGATCCTCTACGGCAA
GGGCATCTACCACGCCGGCGAAGTGGTCGACCTGGGCGTGCAGTGCAACCTGATCGACAAGGCCGGTGCCTGGTACAGCT
ACAAGGGCAACAAGATCGGCCAGGGCAAGGCCAACGCCGCCCAGTTCCTCGAGGACAACCCGGCGGTGATGGAGGAGATC
GAGAGCCAGATCCGCGGCCAGCTACTGGCGACGGTGGCGCCCAAGGAGGAGGAGGCCGGTGAGCCGGTCGCCGTCGAAGC
CGAGCGCGAGGACGACCTGCTCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

81.212

93.22

0.757
  recA Acinetobacter baylyi ADP1

73.789

99.153

0.732
  recA Acinetobacter baumannii D1279779

72.65

99.153

0.72
  recA Glaesserella parasuis strain SC1401

72.222

91.525

0.661
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.472

92.09

0.658
  recA Vibrio cholerae strain A1552

71.472

92.09

0.658
  recA Neisseria gonorrhoeae MS11

70.807

90.96

0.644
  recA Neisseria gonorrhoeae MS11

70.807

90.96

0.644
  recA Neisseria gonorrhoeae strain FA1090

70.807

90.96

0.644
  recA Ralstonia pseudosolanacearum GMI1000

71.338

88.701

0.633
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.997

96.328

0.588
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.562

94.068

0.579
  recA Helicobacter pylori 26695

62.27

92.09

0.573
  recA Streptococcus pyogenes NZ131

56.941

99.718

0.568
  recA Helicobacter pylori strain NCTC11637

61.656

92.09

0.568
  recA Bacillus subtilis subsp. subtilis str. 168

62.187

90.395

0.562
  recA Latilactobacillus sakei subsp. sakei 23K

58.754

95.198

0.559
  recA Streptococcus mitis SK321

59.816

92.09

0.551
  recA Streptococcus mitis NCTC 12261

59.509

92.09

0.548
  recA Streptococcus mutans UA159

59.021

92.373

0.545
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.055

92.938

0.54
  recA Streptococcus pneumoniae Rx1

58.282

92.09

0.537
  recA Streptococcus pneumoniae D39

58.282

92.09

0.537
  recA Streptococcus pneumoniae R6

58.282

92.09

0.537
  recA Streptococcus pneumoniae TIGR4

58.282

92.09

0.537
  recA Lactococcus lactis subsp. cremoris KW2

56.966

91.243

0.52