Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   OCT48_RS02530 Genome accession   NZ_CP107008
Coordinates   536317..537378 (+) Length   353 a.a.
NCBI ID   WP_263591183.1    Uniprot ID   -
Organism   Halomonas sp. M4R1S46     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 531317..542378
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCT48_RS02515 (OCT48_02515) fdxA 532133..532456 (-) 324 WP_263591180.1 ferredoxin FdxA -
  OCT48_RS02520 (OCT48_02520) mutS 532677..535256 (-) 2580 WP_263591181.1 DNA mismatch repair protein MutS -
  OCT48_RS02525 (OCT48_02525) - 535660..536181 (+) 522 WP_263591182.1 CinA family protein -
  OCT48_RS02530 (OCT48_02530) recA 536317..537378 (+) 1062 WP_263591183.1 recombinase RecA Machinery gene
  OCT48_RS02535 (OCT48_02535) - 537382..537852 (+) 471 WP_263591184.1 regulatory protein RecX -
  OCT48_RS02540 (OCT48_02540) alaS 538151..540757 (+) 2607 WP_263591185.1 alanine--tRNA ligase -
  OCT48_RS02545 (OCT48_02545) - 540863..542113 (+) 1251 WP_263591186.1 aspartate kinase -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 37754.91 Da        Isoelectric Point: 4.7662

>NTDB_id=737318 OCT48_RS02530 WP_263591183.1 536317..537378(+) (recA) [Halomonas sp. M4R1S46]
MAQDDNRSKALDAALSQIDRQFGKGTVMRLGDAPRVVMPSVSTGSLGLDIALGIGGLPYGRVVEIFGPESSGKTTLTLSV
IAEAQRQGKTCAFIDAEHALDPSYAEKLGVNLDDLLVSQPDTGEQALEICDMLVRSGGVDVIIIDSVAALTPRAEIEGEM
GDSHVGLQARLMSQALRKITGHMKSANCMVVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRTGSVKQGDEVTG
NETRVKVVKNKVAPPFRQAEFQILYGKGIYHAGEVVDLGVQCGLVDKAGAWYSYQGNKIGQGKANAAQFLEDNPAVMEEI
ESQIRAQLLATPEPKEEAAEATADAGERNDDLL

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=737318 OCT48_RS02530 WP_263591183.1 536317..537378(+) (recA) [Halomonas sp. M4R1S46]
ATGGCTCAGGACGACAATCGTTCCAAGGCGCTCGACGCCGCGCTTTCCCAGATCGACCGGCAGTTCGGCAAGGGCACCGT
GATGCGCCTGGGGGATGCCCCGCGCGTGGTGATGCCGTCGGTATCCACCGGCTCGCTGGGGCTGGATATCGCGCTGGGCA
TCGGCGGCTTGCCCTACGGCCGGGTGGTGGAGATCTTCGGCCCCGAGTCCTCGGGCAAGACCACCCTGACCCTGTCGGTG
ATCGCCGAGGCCCAGAGGCAGGGCAAGACCTGCGCCTTCATCGACGCCGAGCACGCCCTGGATCCGAGCTATGCCGAGAA
GCTCGGCGTCAACCTCGACGACCTGCTGGTCTCCCAGCCGGATACCGGCGAGCAGGCCCTCGAGATCTGCGACATGCTGG
TGCGCTCCGGCGGGGTCGACGTGATCATCATCGACTCGGTGGCGGCGCTGACTCCGCGGGCCGAGATCGAGGGCGAGATG
GGCGATTCCCACGTCGGCCTGCAGGCGCGGCTGATGTCCCAGGCGCTGCGCAAGATCACCGGCCACATGAAGAGCGCCAA
CTGCATGGTGGTGTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAGTCCCGAGACCACCACCGGCGGCA
ACGCCCTGAAGTTCTATTCCAGCGTGCGCCTCGACATCCGCCGTACCGGCTCGGTGAAGCAGGGCGACGAGGTCACCGGC
AACGAGACCCGGGTCAAGGTCGTCAAGAACAAGGTGGCACCGCCGTTCCGCCAGGCCGAGTTCCAGATCCTCTATGGCAA
GGGCATCTACCACGCCGGCGAGGTAGTCGACCTCGGCGTGCAGTGCGGCCTGGTCGACAAGGCCGGCGCCTGGTACAGCT
ACCAGGGCAACAAGATCGGCCAGGGCAAGGCCAACGCCGCCCAGTTCCTCGAGGACAACCCGGCGGTGATGGAGGAGATC
GAGAGCCAGATCCGCGCCCAGTTGCTGGCCACCCCCGAGCCCAAGGAGGAGGCGGCCGAGGCCACCGCCGACGCGGGCGA
ACGCAACGACGATCTGCTCTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

78.488

97.45

0.765
  recA Acinetobacter baylyi ADP1

72.857

99.15

0.722
  recA Acinetobacter baumannii D1279779

74.695

92.918

0.694
  recA Vibrio cholerae strain A1552

69.298

96.884

0.671
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.298

96.884

0.671
  recA Glaesserella parasuis strain SC1401

69.207

92.918

0.643
  recA Neisseria gonorrhoeae MS11

69.969

91.501

0.64
  recA Neisseria gonorrhoeae MS11

69.969

91.501

0.64
  recA Neisseria gonorrhoeae strain FA1090

69.969

91.501

0.64
  recA Ralstonia pseudosolanacearum GMI1000

71.111

89.235

0.635
  recA Helicobacter pylori 26695

60.58

97.734

0.592
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.497

92.351

0.586
  recA Helicobacter pylori strain NCTC11637

60

97.734

0.586
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.607

95.184

0.586
  recA Bacillus subtilis subsp. subtilis str. 168

62.813

90.652

0.569
  recA Streptococcus pyogenes NZ131

56.25

99.717

0.561
  recA Streptococcus mutans UA159

55.493

100

0.558
  recA Latilactobacillus sakei subsp. sakei 23K

58.457

95.467

0.558
  recA Streptococcus mitis SK321

56.433

96.884

0.547
  recA Streptococcus mitis NCTC 12261

57.055

92.351

0.527
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.923

92.068

0.524
  recA Lactococcus lactis subsp. cremoris KW2

56.173

91.785

0.516
  recA Streptococcus pneumoniae Rx1

55.828

92.351

0.516
  recA Streptococcus pneumoniae D39

55.828

92.351

0.516
  recA Streptococcus pneumoniae R6

55.828

92.351

0.516
  recA Streptococcus pneumoniae TIGR4

55.828

92.351

0.516