Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   OCT39_RS13085 Genome accession   NZ_CP107007
Coordinates   2856362..2857423 (-) Length   353 a.a.
NCBI ID   WP_263584902.1    Uniprot ID   -
Organism   Halomonas sp. GD1P12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2851362..2862423
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCT39_RS13070 (OCT39_13070) - 2851706..2852956 (-) 1251 WP_263584899.1 aspartate kinase -
  OCT39_RS13075 (OCT39_13075) alaS 2853086..2855692 (-) 2607 WP_263584900.1 alanine--tRNA ligase -
  OCT39_RS13080 (OCT39_13080) - 2855852..2856337 (-) 486 WP_263584901.1 regulatory protein RecX -
  OCT39_RS13085 (OCT39_13085) recA 2856362..2857423 (-) 1062 WP_263584902.1 recombinase RecA Machinery gene
  OCT39_RS13090 (OCT39_13090) - 2857577..2858050 (-) 474 WP_263587343.1 CinA family protein -
  OCT39_RS13095 (OCT39_13095) mutS 2858219..2860783 (+) 2565 WP_263584903.1 DNA mismatch repair protein MutS -
  OCT39_RS13100 (OCT39_13100) fdxA 2860938..2861261 (+) 324 WP_263584904.1 ferredoxin FdxA -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 37833.10 Da        Isoelectric Point: 4.9373

>NTDB_id=737301 OCT39_RS13085 WP_263584902.1 2856362..2857423(-) (recA) [Halomonas sp. GD1P12]
MAQDENRTKALNAALSQIDRQFGKGTVMRLGDAPRVVMPSVSTGSLGLDIALGIGGLPYGRVVEIFGPESSGKTTLTLSV
IAQAQKQGKVCAFVDAEHALDPSYAEKLGINLDDLLVSQPDTGEQALEITDMLVRSGGVDVIIIDSVAALTPRAEIEGEM
GDAHVGLQARLMSQALRKITGNIKNANCLVVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRTGSVKTGDEVTG
NETRVKVVKNKVAPPFRQAEFQILYGKGIYHAGEVIDLGVQCNLVDKAGAWYSYKGSKIGQGKANASQYLEEHPEIMEEI
ESQIRDQLLAKAEPKKEEEVAAADDAGGEDSLI

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=737301 OCT39_RS13085 WP_263584902.1 2856362..2857423(-) (recA) [Halomonas sp. GD1P12]
ATGGCTCAAGATGAAAACCGTACCAAAGCACTGAACGCCGCGCTCAGCCAGATCGATCGTCAGTTCGGCAAGGGCACCGT
CATGCGTCTGGGCGATGCGCCGCGCGTGGTCATGCCGTCGGTATCGACCGGATCATTAGGACTCGACATCGCGCTCGGCA
TTGGCGGTCTGCCCTACGGGCGGGTCGTCGAAATCTTCGGCCCGGAGTCCTCGGGCAAGACCACGCTGACGCTGTCGGTC
ATCGCTCAGGCGCAGAAACAGGGCAAGGTGTGCGCGTTCGTGGACGCCGAGCACGCGCTCGACCCAAGCTACGCGGAAAA
GCTCGGCATCAACCTGGATGACCTGCTGGTCTCCCAGCCGGACACCGGTGAACAGGCGCTCGAGATCACCGACATGCTGG
TGCGCTCCGGCGGTGTCGACGTCATCATCATCGACTCCGTGGCGGCCCTCACCCCGCGCGCCGAGATCGAAGGCGAAATG
GGCGACGCCCACGTGGGTCTGCAGGCGCGCTTGATGTCTCAGGCGCTGCGCAAGATCACCGGCAACATCAAGAACGCCAA
CTGCCTGGTCGTCTTCATCAACCAGATCCGCATGAAAATCGGCGTCATGTTCGGCAGCCCCGAAACCACCACCGGCGGTA
ACGCGCTGAAGTTCTACTCGAGCGTGCGTCTGGATATTCGCCGCACCGGCTCGGTGAAAACCGGCGACGAGGTCACCGGT
AACGAAACCCGCGTGAAGGTCGTGAAGAACAAGGTCGCGCCGCCGTTCCGTCAGGCCGAGTTCCAGATTCTCTACGGCAA
GGGCATCTACCACGCCGGCGAAGTGATCGATCTGGGCGTGCAGTGCAACCTGGTCGACAAGGCCGGCGCCTGGTACAGCT
ACAAGGGCAGCAAGATCGGTCAGGGCAAGGCCAATGCGTCCCAGTACCTGGAAGAGCATCCGGAAATCATGGAAGAGATC
GAGAGCCAGATTCGCGATCAGCTGCTGGCCAAGGCCGAGCCCAAAAAAGAAGAAGAGGTCGCCGCAGCGGATGACGCGGG
CGGCGAAGATAGCCTGATCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

81.361

95.751

0.779
  recA Acinetobacter baylyi ADP1

71.714

99.15

0.711
  recA Acinetobacter baumannii D1279779

73.926

92.351

0.683
  recA Vibrio cholerae strain A1552

68.497

98.017

0.671
  recA Vibrio cholerae O1 biovar El Tor strain E7946

68.497

98.017

0.671
  recA Glaesserella parasuis strain SC1401

70.679

91.785

0.649
  recA Neisseria gonorrhoeae MS11

70.807

91.218

0.646
  recA Neisseria gonorrhoeae MS11

70.807

91.218

0.646
  recA Neisseria gonorrhoeae strain FA1090

70.807

91.218

0.646
  recA Ralstonia pseudosolanacearum GMI1000

71.704

88.102

0.632
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.19

92.351

0.584
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.534

95.467

0.578
  recA Helicobacter pylori 26695

61.702

93.201

0.575
  recA Helicobacter pylori strain NCTC11637

61.094

93.201

0.569
  recA Streptococcus pneumoniae R6

56.818

99.717

0.567
  recA Streptococcus pneumoniae TIGR4

56.818

99.717

0.567
  recA Streptococcus pneumoniae Rx1

56.818

99.717

0.567
  recA Streptococcus pneumoniae D39

56.818

99.717

0.567
  recA Streptococcus mitis SK321

55.65

100

0.558
  recA Bacillus subtilis subsp. subtilis str. 168

61.18

91.218

0.558
  recA Latilactobacillus sakei subsp. sakei 23K

59.077

92.068

0.544
  recA Streptococcus mutans UA159

56.342

96.034

0.541
  recA Streptococcus mitis NCTC 12261

58.282

92.351

0.538
  recA Streptococcus pyogenes NZ131

57.538

92.068

0.53
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.575

92.635

0.524
  recA Lactococcus lactis subsp. cremoris KW2

55.728

91.501

0.51