Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   N7L95_RS14970 Genome accession   NZ_CP106951
Coordinates   3388897..3390024 (+) Length   375 a.a.
NCBI ID   WP_301256045.1    Uniprot ID   -
Organism   Eleftheria terrae strain P9846-PB     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3383897..3395024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7L95_RS14950 (N7L95_14970) - 3384331..3385284 (-) 954 WP_301256042.1 lipase secretion chaperone -
  N7L95_RS14955 (N7L95_14975) - 3385295..3386251 (-) 957 WP_301256043.1 triacylglycerol lipase -
  N7L95_RS14960 (N7L95_14980) - 3386539..3388005 (-) 1467 WP_301260159.1 sensor histidine kinase N-terminal domain-containing protein -
  N7L95_RS14965 (N7L95_14985) - 3388087..3388758 (-) 672 WP_301256044.1 response regulator transcription factor -
  N7L95_RS14970 (N7L95_14990) recA 3388897..3390024 (+) 1128 WP_301256045.1 recombinase RecA Machinery gene
  N7L95_RS14975 (N7L95_14995) recX 3390047..3390496 (+) 450 WP_301256046.1 recombination regulator RecX -
  N7L95_RS14980 (N7L95_15000) - 3390898..3391503 (+) 606 WP_301256047.1 DUF2889 domain-containing protein -
  N7L95_RS14985 (N7L95_15005) sucC 3391515..3392675 (+) 1161 WP_301256048.1 ADP-forming succinate--CoA ligase subunit beta -
  N7L95_RS14990 (N7L95_15010) sucD 3392694..3393587 (+) 894 WP_301256049.1 succinate--CoA ligase subunit alpha -
  N7L95_RS14995 (N7L95_15015) - 3393775..3394497 (+) 723 WP_301256050.1 TerC family protein -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 40030.94 Da        Isoelectric Point: 5.3980

>NTDB_id=736796 N7L95_RS14970 WP_301256045.1 3388897..3390024(+) (recA) [Eleftheria terrae strain P9846-PB]
MDAPTKSALNTEKAKALQAALAQIEKQFGKGSIMRLGEGEAIDDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGK
TTLTLQVVAEMQKQGGVCAFIDAEHALDVQYAQKLGVNLQDLLISQPDTGEQALEIVDALVRSGSVDLIIIDSVAALTPK
AELEGEMGDSLPGLQARLMSQALRKLTATIKKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRVGSIK
KGEEVIGNETKVKVVKNKVSPPFKTADFDILYGEGISREGEIIDMGVNARIVEKSGAWYAYNGEKIGQGKDNAREFLREN
PDVAFEIENKVRAALNIPLLAAAPGAKPDTDRAEKSAEKPADKPAGKAKAAPRDE

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=736796 N7L95_RS14970 WP_301256045.1 3388897..3390024(+) (recA) [Eleftheria terrae strain P9846-PB]
ATGGACGCACCTACCAAATCTGCCCTCAACACCGAGAAGGCGAAAGCCCTGCAGGCCGCCCTGGCCCAGATTGAAAAGCA
GTTCGGCAAGGGCTCCATCATGCGCCTCGGCGAAGGCGAGGCGATCGACGACATCCAGGTCGTCTCCACCGGCTCGCTGG
GCCTGGACATCGCGCTTGGCGTGGGCGGCCTGCCGCGCGGCCGGGTGGTCGAGATCTACGGCCCGGAATCGTCCGGCAAG
ACGACGCTGACGCTGCAGGTCGTGGCCGAGATGCAGAAGCAGGGCGGCGTCTGTGCCTTCATCGATGCGGAGCATGCGCT
GGACGTGCAGTATGCCCAGAAGCTCGGCGTCAACCTCCAGGACCTGCTGATCTCCCAGCCCGACACCGGCGAGCAGGCGC
TCGAAATCGTTGATGCACTGGTGCGCTCCGGCTCGGTCGACCTGATCATCATCGACTCGGTGGCCGCCCTCACGCCCAAG
GCGGAACTCGAAGGCGAGATGGGCGACAGCCTGCCGGGCCTGCAGGCCCGCCTGATGAGCCAGGCCTTGCGCAAGCTGAC
CGCCACGATCAAGAAGACCAACTGCATGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCTCGC
CCGAAACGACCACCGGCGGCAATGCGCTGAAGTTCTACGCCTCGGTGCGCCTGGACATCCGTCGCGTCGGCTCGATCAAG
AAGGGCGAAGAGGTGATCGGCAACGAGACCAAGGTCAAGGTTGTCAAGAACAAGGTCTCGCCTCCGTTCAAGACAGCTGA
TTTCGACATCCTCTACGGCGAAGGCATCAGCCGCGAGGGCGAGATCATCGACATGGGCGTGAACGCCCGCATCGTCGAGA
AGTCGGGCGCCTGGTACGCCTACAACGGCGAAAAGATCGGCCAGGGCAAGGACAACGCGCGCGAATTCCTGCGCGAGAAC
CCCGACGTCGCCTTCGAGATCGAGAACAAGGTGCGGGCGGCCCTCAACATCCCGCTGCTGGCCGCCGCGCCGGGCGCCAA
GCCCGACACCGATCGTGCGGAGAAGTCAGCAGAAAAACCGGCGGACAAGCCGGCCGGCAAGGCCAAGGCCGCGCCTCGCG
ACGAGTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(15-277)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

80.938

90.933

0.736
  recA Neisseria gonorrhoeae strain FA1090

70.262

91.467

0.643
  recA Neisseria gonorrhoeae MS11

70.262

91.467

0.643
  recA Neisseria gonorrhoeae MS11

70.262

91.467

0.643
  recA Glaesserella parasuis strain SC1401

68.182

93.867

0.64
  recA Vibrio cholerae O1 biovar El Tor strain E7946

68.012

92.533

0.629
  recA Vibrio cholerae strain A1552

68.012

92.533

0.629
  recA Pseudomonas stutzeri DSM 10701

71.865

87.2

0.627
  recA Acinetobacter baylyi ADP1

70.031

87.2

0.611
  recA Acinetobacter baumannii D1279779

69.419

87.2

0.605
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.152

88

0.573
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.955

88.267

0.573
  recA Streptococcus mutans UA159

58.333

96

0.56
  recA Bacillus subtilis subsp. subtilis str. 168

65.217

85.867

0.56
  recA Latilactobacillus sakei subsp. sakei 23K

63.804

86.933

0.555
  recA Helicobacter pylori 26695

63.222

87.733

0.555
  recA Lactococcus lactis subsp. cremoris KW2

63.303

87.2

0.552
  recA Helicobacter pylori strain NCTC11637

62.918

87.733

0.552
  recA Streptococcus mitis SK321

60.06

88.8

0.533
  recA Streptococcus pneumoniae D39

60.06

88.8

0.533
  recA Streptococcus pneumoniae R6

60.06

88.8

0.533
  recA Streptococcus pneumoniae TIGR4

60.06

88.8

0.533
  recA Streptococcus pneumoniae Rx1

60.06

88.8

0.533
  recA Streptococcus mitis NCTC 12261

59.76

88.8

0.531
  recA Streptococcus pyogenes NZ131

61.231

86.667

0.531
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.226

89.6

0.531