Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   M9799_RS08950 Genome accession   NZ_CP106881
Coordinates   2002544..2003698 (-) Length   384 a.a.
NCBI ID   WP_231042797.1    Uniprot ID   -
Organism   Comamonas endophytica strain 5MLIR     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1997544..2008698
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M9799_RS08925 (M9799_08925) - 1997662..1998426 (-) 765 WP_250621331.1 Stp1/IreP family PP2C-type Ser/Thr phosphatase -
  M9799_RS08930 (M9799_08930) sucD 1998742..1999635 (-) 894 WP_231042801.1 succinate--CoA ligase subunit alpha -
  M9799_RS08935 (M9799_08935) sucC 1999656..2000816 (-) 1161 WP_231042800.1 ADP-forming succinate--CoA ligase subunit beta -
  M9799_RS08940 (M9799_08940) argC 2001010..2001942 (+) 933 WP_231042799.1 N-acetyl-gamma-glutamyl-phosphate reductase -
  M9799_RS08945 (M9799_08945) recX 2002023..2002484 (-) 462 WP_231042798.1 recombination regulator RecX -
  M9799_RS08950 (M9799_08950) recA 2002544..2003698 (-) 1155 WP_231042797.1 recombinase RecA Machinery gene
  M9799_RS08955 (M9799_08955) - 2003838..2004362 (+) 525 WP_231042796.1 MarR family winged helix-turn-helix transcriptional regulator -
  M9799_RS08960 (M9799_08960) - 2004517..2005191 (+) 675 WP_231042795.1 response regulator transcription factor -
  M9799_RS08965 (M9799_08965) - 2005301..2006740 (+) 1440 WP_231042794.1 sensor histidine kinase -
  M9799_RS08970 (M9799_08970) - 2006694..2007713 (-) 1020 WP_231042793.1 LysR substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 40621.49 Da        Isoelectric Point: 5.2297

>NTDB_id=736407 M9799_RS08950 WP_231042797.1 2002544..2003698(-) (recA) [Comamonas endophytica strain 5MLIR]
MDVTTVKGNNPAAAANTEKAKALQAALAQIEKQFGKGTIMRLGEGEVIEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG
PESSGKTTLTLQVIAEMQKQGGQCAFVDAEHALDVQYAQKLGVQLSDLLISQPDTGEQALEIVDSLVRSGAVDLIVVDSV
AALTPKAEIEGEMGDALPGLQARLMSQALRKLTATIKKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIR
RTGTIKKGDNAIGNETRVKVVKNKVSPPFKTAEFDILFGEGISREGEIIDMGVEAKILDKSGAWYAYRGEKIGQGRDNAR
EFLRENPDLAFEIENRVRESLGVSLLAGATPAPAAGKPAKADKAAEKAEKADKAAAASAEPAGE

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=736407 M9799_RS08950 WP_231042797.1 2002544..2003698(-) (recA) [Comamonas endophytica strain 5MLIR]
ATGGACGTCACCACTGTCAAGGGCAACAACCCCGCCGCCGCTGCCAACACCGAAAAGGCCAAGGCACTGCAGGCTGCGCT
GGCCCAGATCGAAAAGCAGTTCGGCAAGGGCACCATCATGCGCCTGGGCGAAGGCGAAGTCATCGAAGACATCCAGGTCG
TGTCCACCGGCTCGCTGGGCCTGGACATCGCACTGGGCGTCGGCGGCCTGCCGCGCGGCCGCGTGGTCGAGATCTACGGC
CCTGAATCCTCGGGCAAGACCACGCTCACGCTGCAGGTCATTGCCGAGATGCAGAAACAGGGCGGCCAGTGCGCGTTCGT
CGACGCCGAGCACGCGCTGGACGTGCAATACGCCCAGAAACTGGGCGTGCAGCTGTCCGACCTGCTGATCAGCCAGCCCG
ACACCGGCGAGCAGGCGCTCGAGATCGTCGACAGCCTGGTGCGCTCGGGCGCCGTGGACCTGATCGTCGTCGACTCGGTG
GCGGCGCTCACGCCCAAGGCCGAAATCGAGGGCGAGATGGGCGACGCGCTGCCCGGCCTGCAGGCCCGACTGATGAGCCA
GGCGCTGCGCAAGCTGACCGCGACGATCAAGAAGACCAACTGCATGGTCATCTTCATCAACCAGATCCGCATGAAGATCG
GTGTCATGTTCGGCTCGCCCGAAACCACCACCGGCGGCAATGCGCTGAAGTTCTACGCCTCCGTGCGCCTGGACATCCGC
CGCACCGGCACGATCAAGAAGGGCGACAACGCCATCGGCAACGAAACCCGCGTCAAGGTGGTCAAGAACAAGGTCAGCCC
GCCGTTCAAGACCGCCGAGTTCGACATCCTGTTCGGCGAGGGCATCTCGCGCGAAGGCGAGATCATCGACATGGGCGTCG
AAGCCAAGATCCTCGACAAGTCGGGCGCCTGGTACGCCTACCGCGGCGAGAAGATCGGCCAGGGCCGCGACAACGCGCGT
GAATTCCTGCGCGAGAACCCGGACCTGGCGTTCGAGATCGAGAACCGCGTGCGCGAAAGCCTGGGCGTCTCGCTGCTGGC
CGGCGCCACGCCCGCCCCGGCCGCTGGCAAGCCTGCCAAGGCCGACAAGGCCGCGGAAAAAGCCGAGAAGGCCGACAAGG
CGGCTGCGGCAAGCGCTGAACCCGCAGGCGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

80.938

88.802

0.719
  recA Pseudomonas stutzeri DSM 10701

70.64

89.583

0.633
  recA Neisseria gonorrhoeae MS11

71.341

85.417

0.609
  recA Neisseria gonorrhoeae strain FA1090

71.341

85.417

0.609
  recA Neisseria gonorrhoeae MS11

71.341

85.417

0.609
  recA Acinetobacter baylyi ADP1

71.517

84.115

0.602
  recA Acinetobacter baumannii D1279779

70.898

84.115

0.596
  recA Glaesserella parasuis strain SC1401

70.062

84.375

0.591
  recA Vibrio cholerae strain A1552

69.659

84.115

0.586
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.659

84.115

0.586
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.173

85.677

0.576
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.766

86.719

0.57
  recA Helicobacter pylori strain NCTC11637

65.152

85.938

0.56
  recA Helicobacter pylori 26695

65.152

85.938

0.56
  recA Bacillus subtilis subsp. subtilis str. 168

64.832

85.156

0.552
  recA Latilactobacillus sakei subsp. sakei 23K

63.939

85.938

0.549
  recA Streptococcus mutans UA159

57.345

92.188

0.529
  recA Lactococcus lactis subsp. cremoris KW2

61.212

85.938

0.526
  recA Streptococcus pyogenes NZ131

60.486

85.677

0.518
  recA Streptococcus mitis SK321

59.697

85.938

0.513
  recA Streptococcus mitis NCTC 12261

59.697

85.938

0.513
  recA Streptococcus pneumoniae Rx1

59.394

85.938

0.51
  recA Streptococcus pneumoniae D39

59.394

85.938

0.51
  recA Streptococcus pneumoniae R6

59.394

85.938

0.51
  recA Streptococcus pneumoniae TIGR4

59.394

85.938

0.51
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.125

83.594

0.503