Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   OE104_RS05620 Genome accession   NZ_CP106878
Coordinates   1132398..1133423 (+) Length   341 a.a.
NCBI ID   WP_275418597.1    Uniprot ID   A0A9E8LXW0
Organism   Fervidibacillus albus strain MEBiC13591     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1127398..1138423
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OE104_RS05590 (OE104_05590) - 1127433..1127699 (+) 267 WP_275418592.1 transcriptional regulator SplA domain-containing protein -
  OE104_RS05595 (OE104_05595) splB 1127692..1128723 (+) 1032 WP_275418593.1 spore photoproduct lyase -
  OE104_RS05600 (OE104_05600) - 1128821..1129096 (+) 276 WP_275418594.1 YqhV family protein -
  OE104_RS05605 (OE104_05605) - 1129263..1130429 (-) 1167 WP_275418595.1 redoxin domain-containing protein -
  OE104_RS05610 (OE104_05610) - 1130510..1131307 (-) 798 WP_275418596.1 acyl-[acyl-carrier-protein] thioesterase -
  OE104_RS05615 (OE104_05615) - 1131574..1132119 (-) 546 WP_275419082.1 GNAT family N-acetyltransferase -
  OE104_RS05620 (OE104_05620) recA 1132398..1133423 (+) 1026 WP_275418597.1 recombinase RecA Machinery gene
  OE104_RS05625 (OE104_05625) rny 1133731..1135290 (+) 1560 WP_275419083.1 ribonuclease Y -
  OE104_RS05630 (OE104_05630) - 1135419..1136216 (+) 798 WP_275418598.1 TIGR00282 family metallophosphoesterase -
  OE104_RS05635 (OE104_05635) spoVS 1136381..1136641 (+) 261 WP_019391885.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37105.27 Da        Isoelectric Point: 5.0729

>NTDB_id=736367 OE104_RS05620 WP_275418597.1 1132398..1133423(+) (recA) [Fervidibacillus albus strain MEBiC13591]
MSDRQAALEQALKQIEKQFGKGSIMKLGEQTDRQVSTVSSGSLALDIALGVGGYPRGRIIEIYGPESSGKTTVALHAIAQ
VQAQGGQAAFIDAEHALDPQYAKNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVVDSVAALVPKAEIEGEMGDA
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRAEQLKQGNEMVGSKT
KIKIVKNKVAPPFKTAEVDIMYGEGISLEGEIIDIGSELDIVQKSGAWYSYEGERLGQGRENAKMFIKEHPELKHDIMSK
IREYYQLEPIQSNTEAENVEE

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=736367 OE104_RS05620 WP_275418597.1 1132398..1133423(+) (recA) [Fervidibacillus albus strain MEBiC13591]
GTGAGTGATCGTCAAGCCGCCTTAGAACAGGCGTTAAAACAAATCGAAAAACAATTTGGGAAAGGGTCGATCATGAAGTT
GGGTGAACAAACGGATCGACAAGTTTCCACCGTATCTTCTGGATCATTAGCCCTCGATATCGCATTAGGTGTTGGCGGAT
ATCCCCGTGGAAGAATTATCGAAATTTATGGCCCGGAAAGTTCCGGTAAAACGACTGTCGCTTTACATGCAATCGCACAA
GTACAAGCACAAGGAGGACAAGCGGCGTTTATTGATGCCGAACATGCACTAGACCCCCAATATGCGAAAAATTTAGGTGT
CAATATCGATGAATTGCTTCTTTCCCAACCGGATACGGGAGAGCAAGCATTGGAAATTGCTGAAGCACTCGTGCGTAGCG
GAGCGGTCGATATTATCGTTGTCGACTCCGTTGCGGCCCTTGTTCCAAAGGCGGAAATCGAAGGGGAAATGGGGGATGCA
CACGTCGGATTGCAAGCGCGGCTCATGTCCCAAGCGTTACGGAAATTATCCGGTGCTATTAATAAATCGAAAACAATTGC
TATTTTCATTAACCAAATTCGGGAAAAAGTTGGCGTGATGTTCGGAAATCCGGAAACGACACCGGGCGGCCGTGCATTGA
AATTTTATAGTACCGTCCGATTAGAAGTTCGCCGGGCAGAACAATTGAAACAAGGAAATGAAATGGTCGGTAGTAAAACG
AAGATTAAAATTGTTAAAAACAAAGTTGCTCCACCATTTAAAACAGCTGAAGTGGATATTATGTACGGAGAAGGGATATC
GTTAGAAGGAGAAATCATCGATATCGGGTCTGAACTTGATATCGTCCAAAAAAGTGGTGCTTGGTATTCCTATGAAGGCG
AGCGTCTCGGCCAAGGTCGAGAAAATGCGAAAATGTTCATCAAAGAACATCCCGAATTAAAACATGACATTATGTCGAAA
ATCCGTGAATATTATCAACTCGAACCGATTCAATCGAATACTGAAGCAGAAAATGTAGAGGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

85.976

96.188

0.827
  recA Latilactobacillus sakei subsp. sakei 23K

75.305

96.188

0.724
  recA Streptococcus mutans UA159

68.222

100

0.686
  recA Streptococcus pneumoniae D39

70

96.774

0.677
  recA Streptococcus pneumoniae Rx1

70

96.774

0.677
  recA Streptococcus pneumoniae R6

70

96.774

0.677
  recA Streptococcus pneumoniae TIGR4

70

96.774

0.677
  recA Streptococcus mitis NCTC 12261

69.394

96.774

0.672
  recA Streptococcus mitis SK321

69.394

96.774

0.672
  recA Streptococcus pyogenes NZ131

70.679

95.015

0.672
  recA Lactococcus lactis subsp. cremoris KW2

67.273

96.774

0.651
  recA Neisseria gonorrhoeae strain FA1090

62.899

100

0.636
  recA Neisseria gonorrhoeae MS11

62.899

100

0.636
  recA Neisseria gonorrhoeae MS11

62.899

100

0.636
  recA Ralstonia pseudosolanacearum GMI1000

66.055

95.894

0.633
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.5

100

0.63
  recA Vibrio cholerae strain A1552

62.5

100

0.63
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.765

99.707

0.616
  recA Pseudomonas stutzeri DSM 10701

61.652

99.413

0.613
  recA Acinetobacter baumannii D1279779

64.798

94.135

0.61
  recA Acinetobacter baylyi ADP1

63.863

94.135

0.601
  recA Glaesserella parasuis strain SC1401

62.883

95.601

0.601
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.515

96.774

0.595
  recA Helicobacter pylori 26695

63.043

94.428

0.595
  recA Helicobacter pylori strain NCTC11637

63.043

94.428

0.595
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.875

93.842

0.581