Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   OE105_RS05315 Genome accession   NZ_CP106877
Coordinates   1133301..1134332 (-) Length   343 a.a.
NCBI ID   WP_275421702.1    Uniprot ID   A0A9E8RZU7
Organism   Fervidibacillus halotolerans strain MEBiC13594     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1128301..1139332
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OE105_RS05300 (OE105_05300) spoVS 1130064..1130324 (-) 261 WP_019391885.1 stage V sporulation protein SpoVS -
  OE105_RS05305 (OE105_05305) - 1130492..1131289 (-) 798 WP_275421700.1 TIGR00282 family metallophosphoesterase -
  OE105_RS05310 (OE105_05310) rny 1131414..1132973 (-) 1560 WP_420842573.1 ribonuclease Y -
  OE105_RS05315 (OE105_05315) recA 1133301..1134332 (-) 1032 WP_275421702.1 recombinase RecA Machinery gene
  OE105_RS05320 (OE105_05320) - 1134625..1135185 (+) 561 WP_275421703.1 GNAT family N-acetyltransferase -
  OE105_RS05325 (OE105_05325) - 1135374..1136132 (+) 759 WP_275421704.1 acyl-[acyl-carrier-protein] thioesterase -
  OE105_RS05330 (OE105_05330) - 1136264..1137430 (+) 1167 WP_275421705.1 TlpA disulfide reductase family protein -
  OE105_RS05335 (OE105_05335) - 1137445..1137711 (-) 267 WP_275421706.1 YqhV family protein -
  OE105_RS05340 (OE105_05340) splB 1137845..1138876 (-) 1032 WP_275421707.1 spore photoproduct lyase -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 37283.56 Da        Isoelectric Point: 5.2032

>NTDB_id=736317 OE105_RS05315 WP_275421702.1 1133301..1134332(-) (recA) [Fervidibacillus halotolerans strain MEBiC13594]
MSDRQAALEQALKQIEKQFGKGSVMKLGEQTDRQVSTVSSGSLALDIALGVGGYPRGRIIEIYGPESSGKTTVALHAIAQ
VQAEGGQAAFIDAEHALDPQYAKNLGVNIDELLLSQPDTGEQALEIAEALVRSGAIDIIVVDSVAALVPKAEIEGEMGDA
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRAEQLKQGNEMVGNKT
KIKVVKNKVAPPFKTAEVDIMYGEGISLEGEIIDIGSELDIVQKSGAWYSYEGERLGQGRENAKIFIKEHPELKKEILGK
IREHYQLAPIKSEPEQENQEDLI

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=736317 OE105_RS05315 WP_275421702.1 1133301..1134332(-) (recA) [Fervidibacillus halotolerans strain MEBiC13594]
GTGAGTGATCGTCAAGCCGCCTTAGAACAGGCGTTAAAACAAATCGAAAAACAATTTGGGAAAGGATCGGTCATGAAATT
AGGCGAACAAACGGATCGACAAGTTTCCACCGTATCCAGCGGATCTTTAGCCCTCGATATCGCATTAGGTGTCGGTGGTT
ATCCCCGTGGAAGGATTATTGAAATCTACGGTCCGGAAAGTTCCGGAAAAACGACCGTTGCTTTACATGCCATTGCCCAA
GTACAAGCGGAAGGTGGTCAAGCCGCCTTTATCGATGCCGAACATGCATTAGATCCCCAATATGCGAAAAATTTAGGTGT
AAATATCGATGAATTGCTTCTTTCCCAACCGGATACAGGAGAACAAGCGTTAGAGATTGCAGAAGCACTCGTGCGCAGTG
GTGCCATCGATATTATCGTCGTCGACTCGGTTGCCGCTTTAGTTCCAAAGGCGGAAATCGAAGGGGAAATGGGGGATGCC
CACGTCGGTTTGCAGGCCCGACTTATGTCTCAAGCGTTACGAAAATTGTCTGGTGCCATCAATAAATCGAAAACGATCGC
CATTTTTATTAACCAAATTCGCGAAAAGGTCGGTGTCATGTTCGGAAATCCGGAAACAACACCGGGAGGCCGAGCATTGA
AATTTTATAGTACCGTTCGATTAGAAGTTCGTCGAGCAGAACAATTGAAACAAGGAAATGAAATGGTTGGAAATAAGACG
AAAATAAAAGTTGTAAAAAATAAAGTTGCTCCACCATTTAAAACAGCTGAAGTGGATATTATGTACGGTGAGGGAATATC
ATTAGAAGGGGAGATCATCGATATCGGATCTGAACTTGATATCGTCCAAAAAAGTGGTGCATGGTATTCCTATGAGGGTG
AACGGCTCGGTCAAGGAAGGGAAAATGCAAAGATATTTATCAAAGAGCACCCGGAATTAAAGAAAGAAATTTTAGGTAAA
ATTCGTGAGCATTATCAGCTCGCTCCAATTAAATCCGAACCCGAACAGGAAAATCAAGAAGATTTAATTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

86.239

95.335

0.822
  recA Latilactobacillus sakei subsp. sakei 23K

73.529

99.125

0.729
  recA Streptococcus pneumoniae D39

68.497

100

0.691
  recA Streptococcus pneumoniae R6

68.497

100

0.691
  recA Streptococcus pneumoniae Rx1

68.497

100

0.691
  recA Streptococcus pneumoniae TIGR4

68.497

100

0.691
  recA Streptococcus mitis SK321

68.023

100

0.682
  recA Streptococcus mitis NCTC 12261

68.023

100

0.682
  recA Streptococcus mutans UA159

68.328

99.417

0.679
  recA Streptococcus pyogenes NZ131

70.948

95.335

0.676
  recA Lactococcus lactis subsp. cremoris KW2

67.879

96.21

0.653
  recA Neisseria gonorrhoeae strain FA1090

66.355

93.586

0.621
  recA Neisseria gonorrhoeae MS11

66.355

93.586

0.621
  recA Neisseria gonorrhoeae MS11

66.355

93.586

0.621
  recA Vibrio cholerae strain A1552

66.044

93.586

0.618
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.044

93.586

0.618
  recA Ralstonia pseudosolanacearum GMI1000

67.089

92.128

0.618
  recA Helicobacter pylori strain NCTC11637

62.059

99.125

0.615
  recA Helicobacter pylori 26695

62.059

99.125

0.615
  recA Acinetobacter baumannii D1279779

65.528

93.878

0.615
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.471

99.125

0.609
  recA Pseudomonas stutzeri DSM 10701

61.29

99.417

0.609
  recA Acinetobacter baylyi ADP1

64.596

93.878

0.606
  recA Glaesserella parasuis strain SC1401

60.588

99.125

0.601
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.121

96.21

0.598
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.5

93.294

0.583