Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   OCJ37_RS11665 Genome accession   NZ_CP106869
Coordinates   2784495..2785544 (-) Length   349 a.a.
NCBI ID   WP_263109584.1    Uniprot ID   -
Organism   Xanthomonas sp. AM6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2779495..2790544
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCJ37_RS11640 (OCJ37_11640) - 2780265..2780540 (-) 276 WP_263109579.1 DUF6538 domain-containing protein -
  OCJ37_RS11650 (OCJ37_11650) csrA 2780784..2780996 (-) 213 WP_263109581.1 carbon storage regulator CsrA -
  OCJ37_RS11655 (OCJ37_11655) alaS 2781130..2783778 (-) 2649 WP_263109582.1 alanine--tRNA ligase -
  OCJ37_RS11660 (OCJ37_11660) recX 2783885..2784379 (-) 495 WP_263109583.1 recombination regulator RecX -
  OCJ37_RS11665 (OCJ37_11665) recA 2784495..2785544 (-) 1050 WP_263109584.1 recombinase RecA Machinery gene
  OCJ37_RS11670 (OCJ37_11670) lexA 2785742..2786377 (-) 636 WP_263109585.1 transcriptional repressor LexA -
  OCJ37_RS11675 (OCJ37_11675) - 2786656..2788332 (-) 1677 WP_263109586.1 AarF/UbiB family protein -
  OCJ37_RS11680 (OCJ37_11680) - 2788373..2788867 (-) 495 WP_263109588.1 CinA family protein -
  OCJ37_RS11685 (OCJ37_11685) hflX 2789206..2790531 (-) 1326 WP_263109590.1 ribosome rescue GTPase HflX -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37533.16 Da        Isoelectric Point: 4.9761

>NTDB_id=736188 OCJ37_RS11665 WP_263109584.1 2784495..2785544(-) (recA) [Xanthomonas sp. AM6]
MDENKKRALAAALSQIEKQFGKGSVMRMGDRVIEAVEVIPTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIA
ECQKKGGTAAFIDAEHALDPIYAAKLGVNVDELLLSQPDTGEQALEIADMLVRSGSVDIVVVDSVAALTPKAEIEGEMGD
QLPGLQARLMSQALRKLTGNIKRSNTLVVFINQLRMKIGVMMPGQSPEVTTGGNALKFYASVRLDIRRIGAIKKGDEIIG
NQTKIKVVKNKLAPPFKQVITEILYGEGISREGELIDMGVEAKLVEKAGAWYSYGSERIGQGKDNSRQYLRDNPQVAAKL
ESELREKFQPTEIAPSAAEAEDADADVEA

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=736188 OCJ37_RS11665 WP_263109584.1 2784495..2785544(-) (recA) [Xanthomonas sp. AM6]
ATGGACGAGAACAAGAAGCGCGCGCTCGCCGCCGCCCTGAGCCAGATCGAGAAGCAGTTCGGCAAGGGATCGGTGATGCG
GATGGGCGATCGCGTCATCGAAGCCGTGGAAGTGATTCCGACCGGCTCGCTGATGCTGGACATCGCGCTGGGCATCGGCG
GCCTGCCGAAGGGCCGCGTCGTCGAGATCTACGGTCCGGAATCCTCGGGCAAGACCACCCTGACCCTGCAGGCCATCGCC
GAATGCCAGAAGAAGGGCGGCACCGCCGCCTTCATCGACGCCGAGCACGCGCTGGACCCGATCTACGCGGCCAAGCTCGG
CGTCAACGTCGACGAGCTGCTGCTGTCGCAGCCCGATACCGGCGAGCAGGCCCTTGAGATCGCCGACATGCTGGTGCGCT
CGGGTTCGGTCGACATCGTGGTGGTCGACTCGGTTGCCGCGCTGACCCCGAAGGCCGAAATCGAAGGCGAGATGGGCGAC
CAGCTGCCGGGTCTGCAGGCCCGCCTGATGAGCCAGGCGCTGCGCAAGCTGACCGGCAACATCAAGCGCTCCAACACGCT
GGTGGTGTTCATCAACCAGCTGCGCATGAAGATCGGCGTGATGATGCCCGGCCAGAGCCCGGAAGTGACCACCGGCGGCA
ACGCGCTGAAGTTCTACGCCTCGGTGCGCCTGGACATCCGCCGCATCGGCGCGATCAAGAAGGGCGACGAGATCATCGGC
AACCAGACCAAGATCAAGGTGGTCAAGAACAAGCTGGCGCCGCCGTTCAAGCAGGTCATCACCGAGATCCTGTACGGCGA
GGGCATCAGCCGCGAAGGCGAACTGATCGACATGGGCGTGGAAGCCAAGTTGGTCGAAAAAGCCGGTGCCTGGTACAGCT
ACGGCAGCGAGCGCATCGGCCAGGGCAAGGACAACTCGCGCCAGTACCTGCGCGACAACCCGCAGGTGGCGGCGAAGCTG
GAAAGCGAGCTGCGCGAGAAGTTCCAGCCGACGGAAATCGCGCCGAGCGCGGCCGAGGCTGAAGACGCCGACGCTGACGT
CGAGGCGTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

70.201

100

0.702
  recA Acinetobacter baylyi ADP1

70.674

97.708

0.691
  recA Vibrio cholerae O1 biovar El Tor strain E7946

68.966

99.713

0.688
  recA Vibrio cholerae strain A1552

68.966

99.713

0.688
  recA Acinetobacter baumannii D1279779

71.903

94.842

0.682
  recA Ralstonia pseudosolanacearum GMI1000

75.316

90.544

0.682
  recA Glaesserella parasuis strain SC1401

65.23

99.713

0.65
  recA Neisseria gonorrhoeae MS11

69.018

93.41

0.645
  recA Neisseria gonorrhoeae MS11

69.018

93.41

0.645
  recA Neisseria gonorrhoeae strain FA1090

69.018

93.41

0.645
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.473

95.702

0.607
  recA Latilactobacillus sakei subsp. sakei 23K

61.934

94.842

0.587
  recA Bacillus subtilis subsp. subtilis str. 168

63.077

93.123

0.587
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.062

91.691

0.587
  recA Helicobacter pylori strain NCTC11637

60.542

95.129

0.576
  recA Streptococcus mitis SK321

61.28

93.983

0.576
  recA Helicobacter pylori 26695

60.241

95.129

0.573
  recA Streptococcus pyogenes NZ131

60.606

94.556

0.573
  recA Streptococcus pneumoniae Rx1

60.671

93.983

0.57
  recA Streptococcus mitis NCTC 12261

60.671

93.983

0.57
  recA Streptococcus pneumoniae D39

60.671

93.983

0.57
  recA Streptococcus pneumoniae R6

60.671

93.983

0.57
  recA Streptococcus pneumoniae TIGR4

60.671

93.983

0.57
  recA Streptococcus mutans UA159

60.303

94.556

0.57
  recA Lactococcus lactis subsp. cremoris KW2

59.385

93.123

0.553
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.896

93.41

0.55