Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   N7922_RS05405 Genome accession   NZ_CP106754
Coordinates   1140766..1141830 (+) Length   354 a.a.
NCBI ID   WP_263099594.1    Uniprot ID   -
Organism   Kosakonia sp. ML.JS2a     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1135766..1146830
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7922_RS05380 (N7922_05380) mltB 1136247..1137332 (+) 1086 WP_263099590.1 lytic murein transglycosylase B -
  N7922_RS05385 (N7922_05385) - 1137558..1138232 (+) 675 WP_263099591.1 metal ABC transporter ATP-binding protein -
  N7922_RS05390 (N7922_05390) - 1138229..1139092 (+) 864 WP_263099592.1 metal ABC transporter permease -
  N7922_RS05395 (N7922_05395) - 1139105..1139983 (+) 879 WP_263100840.1 metal ABC transporter substrate-binding protein -
  N7922_RS05400 (N7922_05400) pncC 1140178..1140675 (+) 498 WP_263099593.1 nicotinamide-nucleotide amidase -
  N7922_RS05405 (N7922_05405) recA 1140766..1141830 (+) 1065 WP_263099594.1 recombinase RecA Machinery gene
  N7922_RS05410 (N7922_05410) recX 1141899..1142399 (+) 501 WP_263099595.1 recombination regulator RecX -
  N7922_RS05415 (N7922_05415) alaS 1142531..1145161 (+) 2631 WP_263099596.1 alanine--tRNA ligase -
  N7922_RS05420 (N7922_05420) csrA 1145400..1145585 (+) 186 WP_007370562.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 37980.28 Da        Isoelectric Point: 4.7456

>NTDB_id=734494 N7922_RS05405 WP_263099594.1 1140766..1141830(+) (recA) [Kosakonia sp. ML.JS2a]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVLVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVIG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGDKIGQGKANATTWLKDNPAAAKEI
EKKLREILLSNQSSSAEFSVDDSGEGVEETNEDF

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=734494 N7922_RS05405 WP_263099594.1 1140766..1141830(+) (recA) [Kosakonia sp. ML.JS2a]
ATGGCTATCGACGAAAACAAACAAAAGGCGCTTGCAGCCGCACTGGGTCAGATCGAAAAGCAATTCGGCAAAGGCTCCAT
CATGCGTCTGGGTGAAGACCGTTCCATGGATGTGGAAACCATCTCTACCGGCTCGCTCTCTCTGGATATCGCACTGGGTG
CTGGCGGTTTGCCGATGGGGCGTATCGTCGAAATTTACGGGCCAGAATCTTCCGGTAAAACCACCCTGACGCTGCAGGTG
ATTGCCGCCGCGCAGCGCGAAGGCAAAACCTGTGCGTTTATCGACGCTGAACATGCGCTGGACCCGGTTTATGCCCGCAA
ACTGGGCGTTGATATCGACAACCTGCTGTGTTCTCAGCCGGATACCGGTGAACAGGCTCTGGAGATCTGTGACGCGCTGG
CGCGTTCCGGTGCGGTTGACGTACTGGTGGTCGACTCCGTTGCGGCGCTGACGCCGAAAGCGGAAATCGAAGGCGAAATC
GGCGACTCTCACATGGGCCTCGCGGCGCGTATGATGAGCCAGGCGATGCGTAAGCTGGCGGGTAACCTGAAACAGTCCAA
CACGCTGCTGATCTTTATCAACCAGATCCGTATGAAAATTGGTGTGATGTTCGGTAACCCGGAAACCACCACCGGCGGTA
ACGCGCTGAAATTCTACGCTTCCGTGCGCCTGGATATCCGCCGTATCGGGGCGGTAAAAGAGGGTGACAACGTTATCGGT
AGCGAAACCCGCGTAAAAGTGGTGAAAAACAAAATCGCCGCGCCGTTTAAACAGGCTGAGTTCCAGATCCTCTACGGTGA
AGGCATTAACTTCTACGGCGAACTGGTTGATCTCGGCGTAAAAGAGAAGCTGATTGAGAAAGCGGGTGCCTGGTACAGCT
ATAACGGCGACAAAATCGGCCAGGGCAAAGCTAATGCAACAACCTGGCTGAAAGATAACCCGGCTGCGGCGAAAGAAATC
GAGAAAAAACTGCGTGAGATTCTGCTCAGTAATCAGAGCTCCTCTGCGGAATTCTCGGTGGATGACAGCGGCGAAGGCGT
TGAAGAAACCAACGAAGATTTCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

83.988

93.503

0.785
  recA Vibrio cholerae O1 biovar El Tor strain E7946

83.988

93.503

0.785
  recA Acinetobacter baylyi ADP1

73.716

93.503

0.689
  recA Pseudomonas stutzeri DSM 10701

73.273

94.068

0.689
  recA Glaesserella parasuis strain SC1401

69.231

99.153

0.686
  recA Acinetobacter baumannii D1279779

72.754

94.35

0.686
  recA Neisseria gonorrhoeae MS11

69.136

91.525

0.633
  recA Neisseria gonorrhoeae MS11

69.136

91.525

0.633
  recA Neisseria gonorrhoeae strain FA1090

69.136

91.525

0.633
  recA Ralstonia pseudosolanacearum GMI1000

69.775

87.853

0.613
  recA Streptococcus mitis SK321

59.091

99.435

0.588
  recA Helicobacter pylori strain NCTC11637

62.162

94.068

0.585
  recA Helicobacter pylori 26695

61.862

94.068

0.582
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.42

97.458

0.579
  recA Streptococcus pyogenes NZ131

62.462

91.808

0.573
  recA Streptococcus mutans UA159

62.154

91.808

0.571
  recA Lactococcus lactis subsp. cremoris KW2

62.229

91.243

0.568
  recA Streptococcus mitis NCTC 12261

62.229

91.243

0.568
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.241

93.785

0.565
  recA Bacillus subtilis subsp. subtilis str. 168

62.305

90.678

0.565
  recA Latilactobacillus sakei subsp. sakei 23K

61.538

91.808

0.565
  recA Streptococcus pneumoniae R6

61.61

91.243

0.562
  recA Streptococcus pneumoniae TIGR4

61.61

91.243

0.562
  recA Streptococcus pneumoniae D39

61.61

91.243

0.562
  recA Streptococcus pneumoniae Rx1

61.61

91.243

0.562
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.021

92.373

0.545