Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   N8I74_RS13300 Genome accession   NZ_CP106753
Coordinates   2885988..2887043 (-) Length   351 a.a.
NCBI ID   WP_263123586.1    Uniprot ID   -
Organism   Chitiniphilus purpureus strain CD1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2880988..2892043
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N8I74_RS13275 (N8I74_13275) kdsA 2881152..2882003 (-) 852 WP_263123581.1 3-deoxy-8-phosphooctulonate synthase -
  N8I74_RS13280 (N8I74_13280) - 2882098..2883750 (-) 1653 WP_263123582.1 CTP synthase -
  N8I74_RS13285 (N8I74_13285) - 2883992..2884183 (+) 192 WP_263123583.1 hypothetical protein -
  N8I74_RS13290 (N8I74_13290) phbB 2884253..2884987 (+) 735 WP_263123584.1 acetoacetyl-CoA reductase -
  N8I74_RS13295 (N8I74_13295) recX 2885462..2885917 (-) 456 WP_263123585.1 recombination regulator RecX -
  N8I74_RS13300 (N8I74_13300) recA 2885988..2887043 (-) 1056 WP_263123586.1 recombinase RecA Machinery gene
  N8I74_RS13305 (N8I74_13305) rfaD 2887299..2888300 (-) 1002 WP_263123587.1 ADP-glyceromanno-heptose 6-epimerase -
  N8I74_RS13310 (N8I74_13310) - 2888411..2890186 (-) 1776 WP_263123588.1 glycoside hydrolase family 9 protein -
  N8I74_RS13315 (N8I74_13315) - 2890555..2891364 (-) 810 WP_263123589.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 37684.21 Da        Isoelectric Point: 5.3196

>NTDB_id=734476 N8I74_RS13300 WP_263123586.1 2885988..2887043(-) (recA) [Chitiniphilus purpureus strain CD1]
MDDNKSKALAAALAQIERQFGKGAIMKMGENQIENDLQVVSTGSLGLDLALGVGGLPRGRIVEIFGPESSGKTTLCLHVV
AEVQKAGGVAAYIDAENALDPVYAQKLGVNVSDMLISQPDTGEQALEICDMLVRSSGVDIIVIDSVAALTPRAEIEGDMG
DQLPGLQARLMSQALRKLTASIKRTNTLVIFINQLRMKIGVMMPGQSPETTTGGNALKFYASVRLDIRRIGAVKKGDEII
GNQTKVKIAKNKVAPPFRVVNFDILYGEGISREGEIIEHGAVHKVVEKSGAWYSYNGNKIGQGLENSRQYLKDNPEVADE
IVRRIREKIGGTVLPLESGAGLSDEPESFAE

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=734476 N8I74_RS13300 WP_263123586.1 2885988..2887043(-) (recA) [Chitiniphilus purpureus strain CD1]
ATGGACGACAACAAGAGCAAGGCGTTGGCAGCGGCGCTCGCGCAGATCGAGCGCCAATTCGGCAAGGGCGCCATCATGAA
GATGGGCGAAAACCAGATCGAGAACGATCTGCAGGTGGTTTCCACCGGCTCGCTGGGTCTTGATCTTGCGCTGGGCGTCG
GTGGTCTGCCCCGCGGACGCATCGTCGAGATCTTCGGCCCCGAATCGTCGGGCAAGACCACGCTGTGTCTGCACGTGGTG
GCCGAGGTGCAGAAGGCCGGTGGCGTGGCCGCGTACATCGATGCCGAAAATGCGCTCGATCCGGTGTATGCCCAGAAGCT
GGGCGTCAATGTATCCGACATGCTGATCTCCCAGCCGGATACCGGCGAGCAGGCGCTTGAGATCTGCGACATGCTGGTCC
GCTCCAGCGGGGTGGACATCATCGTCATCGACTCGGTGGCGGCGCTCACCCCCCGTGCCGAGATCGAAGGCGACATGGGC
GACCAGTTGCCTGGCCTGCAGGCCAGGCTGATGAGCCAGGCGCTGCGCAAGCTGACCGCGAGCATCAAGCGCACCAACAC
CCTCGTCATCTTCATCAACCAACTGCGCATGAAGATCGGCGTGATGATGCCCGGCCAGAGCCCTGAGACCACCACCGGCG
GCAATGCGCTCAAGTTCTATGCCTCGGTGCGCCTGGACATCCGCCGCATCGGCGCGGTCAAGAAGGGCGACGAGATCATC
GGCAACCAGACCAAGGTGAAGATCGCCAAGAACAAGGTGGCGCCGCCGTTCCGCGTGGTCAACTTCGATATCCTGTACGG
CGAGGGCATCTCGCGCGAAGGCGAGATCATCGAGCACGGTGCCGTGCACAAGGTGGTCGAGAAATCGGGGGCCTGGTACA
GCTACAACGGCAACAAGATCGGCCAGGGGTTGGAAAACTCTCGGCAGTATCTGAAGGACAACCCCGAGGTGGCGGACGAG
ATCGTGCGCCGGATCCGCGAGAAGATCGGCGGCACCGTGCTGCCGCTCGAATCCGGTGCGGGGTTGTCGGACGAACCCGA
GTCGTTCGCCGAGTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Neisseria gonorrhoeae MS11

73.62

92.877

0.684
  recA Neisseria gonorrhoeae strain FA1090

73.62

92.877

0.684
  recA Neisseria gonorrhoeae MS11

73.62

92.877

0.684
  recA Ralstonia pseudosolanacearum GMI1000

75.079

90.313

0.678
  recA Pseudomonas stutzeri DSM 10701

68.389

93.732

0.641
  recA Glaesserella parasuis strain SC1401

68.502

93.162

0.638
  recA Acinetobacter baylyi ADP1

66.565

93.732

0.624
  recA Vibrio cholerae strain A1552

65.957

93.732

0.618
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.957

93.732

0.618
  recA Acinetobacter baumannii D1279779

65.046

93.732

0.61
  recA Helicobacter pylori strain NCTC11637

60.632

99.145

0.601
  recA Helicobacter pylori 26695

60.345

99.145

0.598
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.636

94.017

0.598
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.862

94.872

0.587
  recA Bacillus subtilis subsp. subtilis str. 168

61.774

93.162

0.576
  recA Latilactobacillus sakei subsp. sakei 23K

58.892

97.721

0.575
  recA Streptococcus pyogenes NZ131

59.337

94.587

0.561
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.939

93.162

0.558
  recA Streptococcus mutans UA159

58.735

94.587

0.556
  recA Streptococcus pneumoniae Rx1

58.485

94.017

0.55
  recA Streptococcus pneumoniae D39

58.485

94.017

0.55
  recA Streptococcus pneumoniae R6

58.485

94.017

0.55
  recA Streptococcus mitis NCTC 12261

58.485

94.017

0.55
  recA Streptococcus mitis SK321

58.485

94.017

0.55
  recA Streptococcus pneumoniae TIGR4

58.485

94.017

0.55
  recA Lactococcus lactis subsp. cremoris KW2

58.537

93.447

0.547