Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   OEG80_RS02500 Genome accession   NZ_CP106752
Coordinates   582356..583414 (-) Length   352 a.a.
NCBI ID   WP_020444176.1    Uniprot ID   A0A9E9B7N7
Organism   Psychrobacter sp. SC65A.3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 577356..588414
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OEG80_RS02475 (SC65A3_00505) folP 578280..579176 (+) 897 WP_263241584.1 dihydropteroate synthase -
  OEG80_RS02480 (SC65A3_00506) - 579308..579589 (+) 282 WP_201531096.1 succinate dehydrogenase assembly factor 2 -
  OEG80_RS02485 (SC65A3_00507) - 579677..580135 (+) 459 WP_263241589.1 hypothetical protein -
  OEG80_RS02490 (SC65A3_00508) - 580359..581075 (+) 717 WP_011514333.1 YidB family protein -
  OEG80_RS02495 (SC65A3_00509) - 581194..582315 (-) 1122 WP_263241592.1 regulatory protein RecX -
  OEG80_RS02500 (SC65A3_00510) recA 582356..583414 (-) 1059 WP_020444176.1 recombinase RecA Machinery gene
  OEG80_RS02505 (SC65A3_00511) trmB 584435..585256 (-) 822 WP_263241594.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  OEG80_RS02510 (SC65A3_00513) - 585476..586405 (+) 930 WP_263241595.1 DUF2628 domain-containing protein -
  OEG80_RS02515 (SC65A3_00514) - 586460..588343 (-) 1884 WP_263241596.1 monovalent cation:proton antiporter-2 (CPA2) family protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37621.08 Da        Isoelectric Point: 5.0391

>NTDB_id=734446 OEG80_RS02500 WP_020444176.1 582356..583414(-) (recA) [Psychrobacter sp. SC65A.3]
MDDNKAKALKAALAQIEKQFGKNTIMHLGDNSATLDVDVVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTMTLQAI
AACQKQGGVCAFIDAEHALDPVYARKLGVNTDDLLLSQPDNGEQALEITDMLVRSGAIDMIVIDSVAALTPRAEIEGEMG
DSHMGLQARLMSQALRKITGNAKRSNCMVLFINQIRMKIGVMFGSPETTTGGNALKFYASVRMDIRRIGAVKNGDEIIGN
QTRVKVIKNKMAPPFRQAEFEITYGEGTNHLAEVIDLGVEIGAVGKAGSWYSYGDEKIGQGKANSVLFLKENPAIAEEIE
AKIRAEKLGVKDDSKAAVVAETNEELASEPVQ

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=734446 OEG80_RS02500 WP_020444176.1 582356..583414(-) (recA) [Psychrobacter sp. SC65A.3]
ATGGACGACAATAAAGCCAAAGCACTTAAAGCTGCACTAGCTCAAATCGAAAAGCAGTTTGGTAAAAATACCATCATGCA
TTTGGGTGACAACTCAGCAACGCTTGATGTCGACGTGGTATCGACTGGTTCATTAGGTTTAGATATTGCACTTGGGATTG
GCGGTTTGCCAAAAGGTCGTATCGTTGAAATTTATGGCCCTGAAAGCTCAGGTAAAACGACTATGACATTGCAGGCAATT
GCAGCGTGCCAGAAACAGGGCGGCGTTTGTGCCTTTATCGATGCTGAGCATGCCTTAGACCCTGTATATGCTCGCAAGCT
TGGTGTGAATACGGATGACTTGCTACTTTCACAGCCTGATAATGGTGAACAAGCACTTGAAATTACTGATATGTTAGTAC
GCTCAGGTGCAATCGATATGATCGTTATTGACTCGGTCGCAGCCTTGACGCCGCGTGCCGAGATTGAAGGTGAGATGGGC
GATTCACACATGGGTCTGCAAGCCCGTCTGATGAGCCAAGCTTTACGTAAAATCACTGGTAACGCCAAACGTTCAAACTG
TATGGTGTTATTTATTAACCAGATTCGTATGAAAATCGGCGTTATGTTCGGTAGCCCTGAAACCACAACTGGTGGTAATG
CGCTTAAGTTCTATGCCTCGGTACGTATGGATATTCGCCGTATCGGTGCAGTCAAAAATGGTGATGAAATCATCGGTAAC
CAAACTCGTGTTAAAGTCATCAAAAACAAAATGGCACCGCCATTCCGCCAAGCTGAATTTGAGATTACTTACGGTGAAGG
CACCAATCACTTAGCCGAAGTGATTGATTTGGGTGTTGAGATTGGTGCAGTTGGTAAAGCGGGCTCTTGGTACAGCTATG
GCGATGAGAAAATCGGTCAAGGTAAAGCCAATTCTGTACTTTTCTTAAAAGAGAATCCTGCTATTGCTGAAGAGATAGAA
GCCAAAATCCGTGCTGAAAAACTTGGCGTAAAGGATGACAGCAAAGCAGCGGTCGTGGCTGAGACTAACGAAGAACTAGC
CTCTGAACCTGTACAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

77.681

98.011

0.761
  recA Acinetobacter baumannii D1279779

76.232

98.011

0.747
  recA Pseudomonas stutzeri DSM 10701

71.848

96.875

0.696
  recA Glaesserella parasuis strain SC1401

68.222

97.443

0.665
  recA Vibrio cholerae strain A1552

71.914

92.045

0.662
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.914

92.045

0.662
  recA Neisseria gonorrhoeae MS11

70.769

92.33

0.653
  recA Neisseria gonorrhoeae MS11

70.769

92.33

0.653
  recA Neisseria gonorrhoeae strain FA1090

70.769

92.33

0.653
  recA Ralstonia pseudosolanacearum GMI1000

68.788

93.75

0.645
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.154

92.33

0.611
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.09

95.17

0.591
  recA Helicobacter pylori strain NCTC11637

63.385

92.33

0.585
  recA Bacillus subtilis subsp. subtilis str. 168

63.58

92.045

0.585
  recA Helicobacter pylori 26695

63.077

92.33

0.582
  recA Latilactobacillus sakei subsp. sakei 23K

59.697

93.75

0.56
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.18

91.477

0.56
  recA Streptococcus mitis NCTC 12261

55.807

100

0.56
  recA Lactococcus lactis subsp. cremoris KW2

58.209

95.17

0.554
  recA Streptococcus pneumoniae TIGR4

58.133

94.318

0.548
  recA Streptococcus pneumoniae D39

58.133

94.318

0.548
  recA Streptococcus pneumoniae R6

58.133

94.318

0.548
  recA Streptococcus pneumoniae Rx1

58.133

94.318

0.548
  recA Streptococcus mitis SK321

57.27

95.739

0.548
  recA Streptococcus mutans UA159

56.845

95.455

0.543
  recA Streptococcus pyogenes NZ131

57.362

92.614

0.531