Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   N7220_RS19315 Genome accession   NZ_CP106736
Coordinates   4204407..4205462 (-) Length   351 a.a.
NCBI ID   WP_283149164.1    Uniprot ID   -
Organism   Silvimonas soli strain 17-6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4199407..4210462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7220_RS19285 - 4199748..4200155 (-) 408 WP_283149158.1 DoxX family protein -
  N7220_RS19290 - 4200371..4201327 (+) 957 WP_283149159.1 LysR family transcriptional regulator -
  N7220_RS19295 - 4201428..4202066 (-) 639 WP_283149160.1 NAD(P)-dependent oxidoreductase -
  N7220_RS19300 - 4202104..4202778 (-) 675 WP_283149161.1 DsbA family protein -
  N7220_RS19305 - 4202887..4203813 (+) 927 WP_283149162.1 LysR family transcriptional regulator -
  N7220_RS19310 recX 4203872..4204387 (-) 516 WP_283149163.1 recombination regulator RecX -
  N7220_RS19315 recA 4204407..4205462 (-) 1056 WP_283149164.1 recombinase RecA Machinery gene
  N7220_RS19320 - 4205800..4207074 (+) 1275 WP_283149165.1 D-amino acid dehydrogenase -
  N7220_RS19325 - 4207149..4208300 (-) 1152 WP_283149166.1 DUF1615 domain-containing protein -
  N7220_RS19330 - 4208593..4209411 (+) 819 WP_283149167.1 MipA/OmpV family protein -
  N7220_RS19335 - 4209449..4210195 (-) 747 WP_283149168.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 37488.03 Da        Isoelectric Point: 5.5186

>NTDB_id=734218 N7220_RS19315 WP_283149164.1 4204407..4205462(-) (recA) [Silvimonas soli strain 17-6]
MDDNKSKALAAALAQIERQFGKGAIMKMGDNQIENDLQVVSTGSLGLDLGLGVGGLPRGRIVEIFGPESSGKTTLCLHVV
AEIQKLGGTAAYIDAENALDPVYAQKLGVNVGDMLISQPDTGEQALEIADMLVRSGGVDIIVVDSVAALTPKAEIEGEMG
DVHVGLQARLMSQALRKLTGNIKRTNTLVIFINQLRMKIGAMMPGQSPETTTGGNALKFYASVRLDIRRIGAVKKGEEVI
GNQTKVKVAKNKVAPPFRVITFDILYGEGISREGEIVEHGVTHKIVEKAGAWYSYNGNKIGQGLENSRQYLKDNPEVAAE
IVAKIREKIGLSSTPIEVGGTQNDEVDVLEA

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=734218 N7220_RS19315 WP_283149164.1 4204407..4205462(-) (recA) [Silvimonas soli strain 17-6]
ATGGATGACAACAAGAGCAAGGCGCTTGCCGCCGCACTGGCACAAATCGAGCGGCAATTCGGCAAAGGCGCCATCATGAA
GATGGGCGACAACCAGATCGAAAACGATCTGCAAGTCGTATCCACCGGCTCCCTCGGGCTGGACCTTGGGCTGGGTGTAG
GCGGTCTGCCACGCGGCCGTATTGTTGAAATTTTCGGACCAGAATCGTCGGGTAAAACCACGCTGTGTCTACACGTGGTT
GCTGAAATCCAGAAGCTGGGCGGCACCGCTGCATATATTGATGCGGAAAACGCGCTGGACCCGGTCTACGCACAAAAGCT
GGGCGTTAACGTTGGCGACATGCTGATTTCGCAGCCGGATACCGGTGAACAAGCTCTGGAAATCGCCGACATGCTGGTGC
GTTCTGGCGGCGTGGATATCATCGTGGTCGACTCGGTGGCCGCACTGACGCCGAAAGCTGAAATTGAAGGCGAAATGGGC
GACGTACACGTCGGCCTGCAAGCCCGGTTGATGAGCCAGGCACTGCGCAAGCTGACCGGTAACATCAAGCGCACCAACAC
GCTGGTGATCTTCATCAACCAGTTGCGTATGAAGATTGGCGCCATGATGCCCGGCCAGAGCCCGGAAACCACCACCGGCG
GTAATGCACTCAAGTTCTATGCTTCTGTCCGTCTGGATATCCGCCGCATTGGCGCAGTCAAGAAAGGTGAAGAAGTCATT
GGTAACCAGACCAAGGTCAAAGTTGCCAAGAACAAGGTCGCCCCTCCATTCCGCGTCATCACCTTCGATATTCTGTACGG
CGAAGGCATCAGCCGTGAAGGCGAGATCGTCGAGCACGGCGTCACCCACAAGATCGTAGAGAAAGCGGGTGCCTGGTATA
GCTATAACGGCAACAAGATTGGCCAAGGCCTGGAGAATTCCCGCCAGTATCTGAAAGACAATCCTGAAGTCGCGGCTGAA
ATCGTCGCCAAGATTCGCGAAAAAATCGGCCTGAGCAGCACACCAATTGAAGTTGGTGGCACGCAAAACGATGAAGTCGA
TGTACTCGAAGCGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Neisseria gonorrhoeae MS11

72.911

98.86

0.721
  recA Neisseria gonorrhoeae MS11

72.911

98.86

0.721
  recA Neisseria gonorrhoeae strain FA1090

72.911

98.86

0.721
  recA Ralstonia pseudosolanacearum GMI1000

75.389

91.453

0.689
  recA Pseudomonas stutzeri DSM 10701

68.915

97.151

0.67
  recA Glaesserella parasuis strain SC1401

65.625

100

0.658
  recA Acinetobacter baylyi ADP1

69.909

93.732

0.655
  recA Acinetobacter baumannii D1279779

65.616

99.43

0.652
  recA Vibrio cholerae O1 biovar El Tor strain E7946

68.389

93.732

0.641
  recA Vibrio cholerae strain A1552

68.389

93.732

0.641
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.899

98.291

0.618
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.664

94.872

0.604
  recA Helicobacter pylori strain NCTC11637

63.939

94.017

0.601
  recA Helicobacter pylori 26695

63.636

94.017

0.598
  recA Latilactobacillus sakei subsp. sakei 23K

60.057

99.145

0.595
  recA Bacillus subtilis subsp. subtilis str. 168

62.424

94.017

0.587
  recA Streptococcus mutans UA159

60.06

94.872

0.57
  recA Streptococcus mitis SK321

57.514

98.575

0.567
  recA Lactococcus lactis subsp. cremoris KW2

59.159

94.872

0.561
  recA Streptococcus pyogenes NZ131

59.337

94.587

0.561
  recA Streptococcus pneumoniae D39

58.308

94.302

0.55
  recA Streptococcus pneumoniae Rx1

58.308

94.302

0.55
  recA Streptococcus pneumoniae R6

58.308

94.302

0.55
  recA Streptococcus pneumoniae TIGR4

58.308

94.302

0.55
  recA Streptococcus mitis NCTC 12261

58.308

94.302

0.55
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.282

92.877

0.541