Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   N8S79_RS08015 Genome accession   NZ_CP106678
Coordinates   1679908..1680942 (+) Length   344 a.a.
NCBI ID   WP_046849786.1    Uniprot ID   A0A0F7KFU6
Organism   Nitrosomonas sp. PLL12-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1674908..1685942
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N8S79_RS08000 - 1675468..1677525 (-) 2058 WP_046849784.1 sodium-translocating pyrophosphatase -
  N8S79_RS08005 - 1677668..1678927 (-) 1260 WP_046849785.1 6-phosphofructokinase -
  N8S79_RS08010 adk 1679039..1679698 (-) 660 WP_046851606.1 adenylate kinase -
  N8S79_RS08015 recA 1679908..1680942 (+) 1035 WP_046849786.1 recombinase RecA Machinery gene
  N8S79_RS08020 recX 1680942..1681391 (+) 450 WP_046849787.1 recombination regulator RecX -
  N8S79_RS08025 alaS 1681434..1684025 (+) 2592 WP_046849788.1 alanine--tRNA ligase -
  N8S79_RS08030 - 1684100..1684762 (+) 663 WP_046849789.1 protocatechuate 3,4-dioxygenase -
  N8S79_RS08035 trxB 1684788..1685738 (+) 951 WP_046849790.1 thioredoxin-disulfide reductase -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 37497.01 Da        Isoelectric Point: 5.2060

>NTDB_id=734065 N8S79_RS08015 WP_046849786.1 1679908..1680942(+) (recA) [Nitrosomonas sp. PLL12-2]
MDENRNKALAAALSQIEKQFGKGSIMRMDASDVASDIQVVSTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLTLQVI
AEMQKMGGTAAFIDAEHALDPQYAQKIGVNIQELLISQPDNGEQALEITDMLVRSGSVDIVVVDSVAALTPRAEIEGEMG
EPQMGLQARLMSQALRKLTANIKRSNTMVIFINQIRMKIGVIFGNPETTTGGNALKFYASVRLDIRRTGSIKKGEEVIGN
ETRVKVVKNKVAPPFKEAEFDILYGEGISRESEIIELGVLYKLIEKAGAWYSYNGEKIGQGRDNVRDYLKEHKEMAKEIE
QKIRAVAGLTELPKAVQSEEKTGD

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=734065 N8S79_RS08015 WP_046849786.1 1679908..1680942(+) (recA) [Nitrosomonas sp. PLL12-2]
ATGGACGAAAATAGAAATAAAGCGCTGGCTGCTGCGCTTTCCCAGATTGAAAAGCAGTTTGGTAAAGGTTCCATCATGCG
GATGGATGCTAGCGATGTGGCTAGCGATATTCAAGTGGTTTCTACCGGGTCCTTGGGGTTGGATATTGCATTAGGTGTCG
GTGGATTACCACGCGGCCGGATCATTGAAATTTATGGCCCTGAATCATCCGGTAAAACTACGCTGACTTTGCAGGTGATT
GCCGAGATGCAAAAAATGGGCGGGACGGCTGCCTTTATCGATGCCGAGCACGCACTGGATCCGCAATATGCTCAGAAAAT
AGGGGTCAATATTCAGGAGCTGCTGATTTCTCAGCCCGATAATGGCGAGCAGGCACTTGAAATAACCGATATGCTGGTTC
GTTCCGGCTCGGTCGATATCGTCGTGGTCGACTCAGTGGCCGCATTGACTCCACGCGCGGAGATTGAAGGTGAGATGGGT
GAACCGCAGATGGGGTTACAAGCAAGACTGATGTCGCAGGCGTTGCGTAAATTGACGGCCAATATCAAGCGCAGCAACAC
CATGGTCATCTTCATCAATCAGATCCGCATGAAGATCGGCGTGATCTTTGGCAATCCCGAAACGACGACTGGCGGCAACG
CCTTAAAGTTTTATGCCTCGGTCCGATTGGATATCCGCCGCACTGGCTCGATCAAAAAGGGCGAAGAAGTGATCGGCAAT
GAAACGCGGGTGAAAGTTGTCAAGAACAAGGTAGCGCCACCATTCAAGGAAGCTGAGTTCGATATTCTTTATGGGGAAGG
CATCTCGCGGGAAAGTGAAATCATTGAATTGGGGGTATTGTATAAATTAATCGAGAAAGCAGGTGCCTGGTATTCTTACA
ATGGTGAAAAGATCGGTCAAGGTAGGGACAATGTGCGCGATTATCTGAAAGAGCATAAGGAAATGGCCAAAGAAATCGAG
CAAAAAATCCGAGCTGTCGCGGGTCTGACTGAACTGCCTAAAGCCGTTCAGTCAGAAGAGAAAACCGGTGATTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F7KFU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

75.385

94.477

0.712
  recA Acinetobacter baumannii D1279779

70.088

99.128

0.695
  recA Pseudomonas stutzeri DSM 10701

73.231

94.477

0.692
  recA Neisseria gonorrhoeae MS11

72.34

95.64

0.692
  recA Neisseria gonorrhoeae MS11

72.34

95.64

0.692
  recA Neisseria gonorrhoeae strain FA1090

72.34

95.64

0.692
  recA Vibrio cholerae strain A1552

73.148

94.186

0.689
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.148

94.186

0.689
  recA Acinetobacter baylyi ADP1

71.296

94.186

0.672
  recA Glaesserella parasuis strain SC1401

71.118

93.605

0.666
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.244

95.349

0.622
  recA Bacillus subtilis subsp. subtilis str. 168

65.337

94.767

0.619
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.997

99.128

0.605
  recA Helicobacter pylori 26695

62.349

96.512

0.602
  recA Latilactobacillus sakei subsp. sakei 23K

62.349

96.512

0.602
  recA Helicobacter pylori strain NCTC11637

62.048

96.512

0.599
  recA Streptococcus pneumoniae R6

61.934

96.221

0.596
  recA Streptococcus pneumoniae Rx1

61.934

96.221

0.596
  recA Streptococcus pneumoniae D39

61.934

96.221

0.596
  recA Streptococcus pneumoniae TIGR4

61.934

96.221

0.596
  recA Streptococcus mitis SK321

60

98.837

0.593
  recA Streptococcus mutans UA159

60.961

96.802

0.59
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.346

94.186

0.587
  recA Streptococcus pyogenes NZ131

61.963

94.767

0.587
  recA Streptococcus mitis NCTC 12261

61.027

96.221

0.587
  recA Lactococcus lactis subsp. cremoris KW2

59.517

96.221

0.573