Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   N7977_RS04275 Genome accession   NZ_CP106660
Coordinates   964793..965863 (+) Length   356 a.a.
NCBI ID   WP_021507334.1    Uniprot ID   -
Organism   Pantoea dispersa strain ML.8a3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 959793..970863
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7977_RS04255 (N7977_04255) mltB 961607..962689 (+) 1083 WP_141496290.1 lytic murein transglycosylase B -
  N7977_RS04260 (N7977_04260) - 962776..963111 (+) 336 WP_021507336.1 zinc ribbon domain-containing protein YjdM -
  N7977_RS04265 (N7977_04265) tam 963326..964102 (+) 777 WP_058780257.1 trans-aconitate 2-methyltransferase -
  N7977_RS04270 (N7977_04270) pncC 964205..964699 (+) 495 WP_010616727.1 nicotinamide-nucleotide amidase -
  N7977_RS04275 (N7977_04275) recA 964793..965863 (+) 1071 WP_021507334.1 recombinase RecA Machinery gene
  N7977_RS04280 (N7977_04280) - 965971..966486 (+) 516 WP_223815705.1 regulatory protein RecX -
  N7977_RS04285 (N7977_04285) alaS 966622..969249 (+) 2628 WP_262257318.1 alanine--tRNA ligase -
  N7977_RS04290 (N7977_04290) csrA 969499..969684 (+) 186 WP_021314278.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 37992.41 Da        Isoelectric Point: 4.8722

>NTDB_id=733804 N7977_RS04275 WP_021507334.1 964793..965863(+) (recA) [Pantoea dispersa strain ML.8a3]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQRKGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDEVVG
SETRVKVVKNKVAAPFKQAEFQIMYGEGINTFGELVDLGVKHKLVEKAGAWYSYNGDKIGQGKANATNFLKENPAIANEL
DVKLRDMLLTGATAEAATADSAADKYEEASETNEDF

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=733804 N7977_RS04275 WP_021507334.1 964793..965863(+) (recA) [Pantoea dispersa strain ML.8a3]
ATGGCGATTGACGAGAACAAACAGAAGGCTTTAGCTGCCGCGCTGGGCCAGATTGAGAAACAATTTGGTAAAGGCTCCAT
CATGCGCCTGGGTGAAGACCGCTCGATGGATGTTGAAACCATCTCTACCGGCTCCCTGTCGCTGGACATCGCGCTGGGCG
CGGGTGGCCTGCCAATGGGCCGTATCGTTGAGATTTACGGACCTGAGTCATCCGGTAAAACCACGCTGACCCTGCAGGTC
ATTGCTGCTGCGCAGCGTAAAGGCAAAACCTGTGCCTTTATCGATGCCGAGCACGCGCTGGATCCGGTATACGCCAAGAA
ACTGGGCGTCGACATTGATAACCTGCTGTGTTCGCAGCCGGATACCGGTGAGCAGGCGCTGGAGATCTGTGATGCGCTGG
CCCGTTCGGGTGCGGTAGACGTGATCATCGTTGACTCCGTGGCGGCGCTGACGCCGAAAGCGGAAATCGAAGGTGAAATC
GGTGATTCGCACATGGGTCTGGCTGCGCGTATGATGAGCCAGGCGATGCGTAAGCTGGCGGGTAACCTCAAGCAGTCCAA
CACGCTGCTGATCTTCATCAACCAGATTCGTATGAAGATTGGTGTGATGTTCGGTAACCCGGAAACCACCACCGGTGGTA
ACGCCCTGAAGTTCTACGCCTCCGTGCGTCTGGATATCCGCCGTATCGGCGCCATTAAAGAGGGCGATGAAGTGGTGGGG
AGCGAAACCCGCGTTAAAGTGGTGAAGAACAAAGTGGCAGCACCGTTTAAGCAGGCTGAGTTCCAGATCATGTACGGTGA
AGGCATCAACACCTTCGGCGAGCTGGTTGACCTCGGCGTGAAGCACAAACTGGTGGAAAAAGCCGGTGCGTGGTACAGCT
ACAACGGCGATAAAATCGGCCAGGGTAAAGCGAACGCCACCAACTTCCTCAAAGAGAACCCGGCGATTGCCAATGAGCTC
GACGTTAAGCTGCGTGACATGCTGCTCACCGGTGCAACGGCAGAAGCGGCGACAGCGGATAGCGCGGCTGATAAATACGA
AGAAGCCAGCGAAACCAACGAAGATTTCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

84.104

97.191

0.817
  recA Vibrio cholerae O1 biovar El Tor strain E7946

84.104

97.191

0.817
  recA Pseudomonas stutzeri DSM 10701

74.405

94.382

0.702
  recA Acinetobacter baylyi ADP1

72.189

94.944

0.685
  recA Acinetobacter baumannii D1279779

73.414

92.978

0.683
  recA Glaesserella parasuis strain SC1401

68.857

98.315

0.677
  recA Neisseria gonorrhoeae MS11

69.136

91.011

0.629
  recA Neisseria gonorrhoeae MS11

69.136

91.011

0.629
  recA Neisseria gonorrhoeae strain FA1090

69.136

91.011

0.629
  recA Ralstonia pseudosolanacearum GMI1000

70.74

87.36

0.618
  recA Streptococcus mitis SK321

58.873

99.719

0.587
  recA Streptococcus mitis NCTC 12261

58.924

99.157

0.584
  recA Streptococcus pneumoniae TIGR4

58.592

99.719

0.584
  recA Streptococcus pneumoniae Rx1

58.592

99.719

0.584
  recA Streptococcus pneumoniae D39

58.592

99.719

0.584
  recA Streptococcus pneumoniae R6

58.592

99.719

0.584
  recA Streptococcus mutans UA159

59.259

98.596

0.584
  recA Helicobacter pylori strain NCTC11637

62.997

91.854

0.579
  recA Helicobacter pylori 26695

62.691

91.854

0.576
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.95

89.607

0.573
  recA Bacillus subtilis subsp. subtilis str. 168

63.24

90.169

0.57
  recA Streptococcus pyogenes NZ131

61.846

91.292

0.565
  recA Lactococcus lactis subsp. cremoris KW2

61.92

90.73

0.562
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.94

93.258

0.559
  recA Latilactobacillus sakei subsp. sakei 23K

61.231

91.292

0.559
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.202

91.573

0.542