Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RS71_RS03305 Genome accession   NZ_CP104920
Coordinates   718473..719549 (-) Length   358 a.a.
NCBI ID   WP_057083000.1    Uniprot ID   -
Organism   Dickeya solani strain RNS 05.1.2A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 713473..724549
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RS71_RS03290 csrA 714669..714854 (-) 186 WP_005972168.1 carbon storage regulator CsrA -
  RS71_RS03295 alaS 715176..717803 (-) 2628 WP_057083001.1 alanine--tRNA ligase -
  RS71_RS03300 recX 717941..718429 (-) 489 WP_057083012.1 recombination regulator RecX -
  RS71_RS03305 recA 718473..719549 (-) 1077 WP_057083000.1 recombinase RecA Machinery gene
  RS71_RS03310 pncC 719659..720147 (-) 489 WP_057082999.1 nicotinamide-nucleotide amidase -
  RS71_RS03315 - 720469..720669 (+) 201 WP_057082998.1 hypothetical protein -
  RS71_RS03320 - 722185..722697 (+) 513 WP_057082997.1 SRPBCC family protein -
  RS71_RS03325 cybB 722781..723314 (-) 534 WP_022634560.1 cytochrome b561 -
  RS71_RS03330 - 723722..724351 (-) 630 WP_022634561.1 LysE family translocator -

Sequence

Protein


Download         Length: 358 a.a.        Molecular weight: 38349.91 Da        Isoelectric Point: 4.9630

>NTDB_id=733517 RS71_RS03305 WP_057083000.1 718473..719549(-) (recA) [Dickeya solani strain RNS 05.1.2A]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGVGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQRGGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKEGEEVVG
SETRVKVVKNKVAAPFKQAEFQILYGEGINTYGELVDLGVKYKLIEKAGAWYSYNGDKIGQGKANACNFLKENPTISAEL
DKKLREMLLHKDNEAVPGVSAKSAEYDEAAAGELNDDF

Nucleotide


Download         Length: 1077 bp        

>NTDB_id=733517 RS71_RS03305 WP_057083000.1 718473..719549(-) (recA) [Dickeya solani strain RNS 05.1.2A]
ATGGCTATTGATGAGAACAAACAAAAGGCACTGGCGGCAGCGCTGGGTCAGATCGAAAAGCAATTCGGTAAAGGTTCTAT
CATGCGTTTGGGCGAAGATCGCTCAATGGATGTTGAAACGATCTCCACGGGCTCCCTGTCGCTCGATATCGCACTGGGTG
TTGGTGGTTTGCCGATGGGGCGTATTGTCGAAATCTACGGTCCGGAATCCTCTGGTAAAACCACGCTGACGCTGCAGGTG
ATTGCGGCCGCGCAGCGTGGAGGCAAAACCTGTGCGTTCATTGATGCCGAGCACGCGCTGGACCCAGTCTACGCAAAGAA
ACTGGGTGTTGATATCGACAATCTGCTGTGTTCTCAGCCGGATACCGGCGAGCAGGCGTTGGAAATCTGTGATGCGTTGG
CTCGCTCCGGCGCGGTGGATGTAATTATCGTTGACTCCGTGGCGGCGTTGACGCCGAAAGCGGAGATCGAAGGGGAAATC
GGCGATTCGCATATGGGACTGGCGGCGCGCATGATGAGCCAGGCTATGCGCAAACTGGCCGGTAACCTGAAACAATCCAA
TACGCTGCTGATCTTTATCAACCAGATTCGTATGAAGATTGGCGTCATGTTCGGTAACCCGGAAACCACGACCGGTGGTA
ACGCGCTGAAGTTCTATGCTTCCGTCCGTCTGGATATCCGCCGTATCGGCTCGATTAAGGAAGGCGAAGAAGTCGTCGGG
AGCGAAACTCGCGTCAAAGTCGTGAAGAACAAGGTTGCCGCACCGTTCAAACAGGCCGAATTCCAGATTCTGTATGGCGA
AGGGATCAATACCTACGGTGAGCTGGTTGATCTGGGCGTGAAGTACAAACTGATTGAGAAAGCCGGTGCCTGGTACAGTT
ACAATGGCGACAAAATTGGGCAGGGCAAGGCTAACGCCTGCAATTTCCTGAAGGAAAATCCGACTATCTCCGCCGAACTC
GATAAGAAACTGCGCGAAATGTTGCTGCACAAAGATAATGAAGCCGTGCCGGGTGTTAGCGCTAAAAGCGCTGAGTACGA
TGAAGCCGCCGCTGGCGAACTCAACGACGATTTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

80.899

99.441

0.804
  recA Vibrio cholerae O1 biovar El Tor strain E7946

80.899

99.441

0.804
  recA Acinetobacter baylyi ADP1

71.098

96.648

0.687
  recA Pseudomonas stutzeri DSM 10701

75.229

91.341

0.687
  recA Glaesserella parasuis strain SC1401

67.989

98.603

0.67
  recA Acinetobacter baumannii D1279779

73.394

91.341

0.67
  recA Neisseria gonorrhoeae MS11

70.552

91.061

0.642
  recA Neisseria gonorrhoeae MS11

70.552

91.061

0.642
  recA Neisseria gonorrhoeae strain FA1090

70.552

91.061

0.642
  recA Ralstonia pseudosolanacearum GMI1000

71.061

86.872

0.617
  recA Streptococcus mutans UA159

59.659

98.324

0.587
  recA Streptococcus pneumoniae TIGR4

61.677

93.296

0.575
  recA Streptococcus pneumoniae Rx1

61.677

93.296

0.575
  recA Streptococcus pneumoniae D39

61.677

93.296

0.575
  recA Streptococcus pneumoniae R6

61.677

93.296

0.575
  recA Helicobacter pylori 26695

62.385

91.341

0.57
  recA Helicobacter pylori strain NCTC11637

62.08

91.341

0.567
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.08

91.341

0.567
  recA Bacillus subtilis subsp. subtilis str. 168

62.928

89.665

0.564
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60

93.575

0.561
  recA Streptococcus mitis SK321

62.229

90.223

0.561
  recA Streptococcus mitis NCTC 12261

62.229

90.223

0.561
  recA Latilactobacillus sakei subsp. sakei 23K

61.538

90.782

0.559
  recA Streptococcus pyogenes NZ131

61.231

90.782

0.556
  recA Lactococcus lactis subsp. cremoris KW2

61.61

90.223

0.556
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.509

91.061

0.542