Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   N8E87_RS11895 Genome accession   NZ_CP104917
Coordinates   2441186..2442265 (+) Length   359 a.a.
NCBI ID   WP_035687924.1    Uniprot ID   A0A0F5EUI0
Organism   Avibacterium paragallinarum strain AP-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2436186..2447265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N8E87_RS11875 (N8E87_11875) - 2436327..2437745 (-) 1419 WP_264244994.1 DUF1116 domain-containing protein -
  N8E87_RS11880 (N8E87_11880) fdrA 2437748..2439295 (-) 1548 WP_130230706.1 acyl-CoA synthetase FdrA -
  N8E87_RS11885 (N8E87_11885) - 2439310..2439897 (-) 588 WP_017805451.1 ankyrin repeat domain-containing protein -
  N8E87_RS11890 (N8E87_11890) - 2439917..2440828 (-) 912 WP_264244997.1 LysR substrate-binding domain-containing protein -
  N8E87_RS11895 (N8E87_11895) recA 2441186..2442265 (+) 1080 WP_035687924.1 recombinase RecA Machinery gene
  N8E87_RS11900 (N8E87_11900) recX 2442350..2442805 (+) 456 WP_035687900.1 recombination regulator RecX -
  N8E87_RS11905 (N8E87_11905) proS 2443046..2444761 (+) 1716 WP_264245001.1 proline--tRNA ligase -
  N8E87_RS11910 (N8E87_11910) - 2445160..2445912 (-) 753 WP_264245003.1 amino acid ABC transporter ATP-binding protein -
  N8E87_RS11915 (N8E87_11915) - 2445923..2446606 (-) 684 WP_404800590.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 359 a.a.        Molecular weight: 38877.49 Da        Isoelectric Point: 4.7737

>NTDB_id=733512 N8E87_RS11895 WP_035687924.1 2441186..2442265(+) (recA) [Avibacterium paragallinarum strain AP-2]
MTTPEEKEKALAAALGQIEKQFGKGSIMKLGEKQDLDIEAISTGSLSLDVALGIGGLPMGRIVEIYGPESSGKTTLTLSV
IAQAQKLGKTCAFIDAEHALDPIYAAKLGVDVKELLVSQPDNGEQALEICDALVRSGAVEVVIVDSVAALTPKAEIEGDM
GDAHVGLQARLMSQALRKLTGQIKNSNCLVVFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRVGSIKDGEQIIG
NETRVKVVKNKVAPPFRQVDFQILYGEGISREGELIELGVKHKLVNKSGSWFSYNGEKIGQGKANAMKWLVEHPEQASAL
ENKLREELLANPDKSLMADIEQAEQENDNNDVMDIESEF

Nucleotide


Download         Length: 1080 bp        

>NTDB_id=733512 N8E87_RS11895 WP_035687924.1 2441186..2442265(+) (recA) [Avibacterium paragallinarum strain AP-2]
ATCACTACCCCAGAAGAAAAAGAAAAAGCACTGGCGGCTGCCTTAGGGCAAATTGAAAAGCAATTTGGTAAAGGCTCAAT
TATGAAGTTGGGCGAAAAGCAAGATTTGGACATTGAAGCAATTTCTACGGGGTCATTGAGTTTAGATGTTGCGTTAGGCA
TCGGCGGCTTGCCAATGGGGCGTATTGTGGAAATTTACGGGCCAGAATCTTCAGGTAAAACCACATTAACCCTTTCTGTT
ATCGCACAAGCACAAAAATTAGGCAAAACCTGTGCCTTTATTGACGCTGAACACGCGTTAGATCCCATCTATGCGGCAAA
ACTGGGCGTTGATGTGAAAGAACTTCTCGTTTCTCAGCCTGATAATGGCGAGCAAGCCTTAGAGATCTGTGATGCGTTGG
TGCGTTCTGGTGCGGTTGAGGTTGTGATTGTGGACTCTGTCGCCGCATTGACACCAAAAGCGGAAATTGAAGGCGATATG
GGCGATGCTCACGTTGGCTTACAAGCCCGTTTAATGTCGCAAGCCTTGCGTAAACTCACGGGGCAAATCAAAAATTCAAA
CTGCTTGGTGGTGTTCATCAACCAAATTCGTATGAAAATTGGCGTGATGTTTGGTAATCCTGAAACCACAACAGGTGGGA
ACGCGTTGAAATTCTATTCCTCCGTGCGTTTAGATATTCGCCGTGTGGGCTCGATTAAAGATGGCGAGCAGATTATCGGT
AACGAAACACGCGTAAAAGTGGTGAAAAACAAAGTTGCACCGCCGTTCCGTCAAGTAGATTTCCAAATTCTTTATGGCGA
AGGCATTTCTCGCGAAGGGGAGCTTATTGAGCTAGGTGTGAAACATAAATTAGTGAATAAATCGGGATCTTGGTTCTCTT
ATAATGGTGAGAAAATCGGGCAAGGAAAAGCCAACGCAATGAAATGGTTGGTTGAACATCCAGAACAAGCCTCAGCATTG
GAAAATAAATTGCGTGAAGAATTGCTAGCAAATCCAGATAAATCCTTAATGGCTGATATTGAACAAGCTGAGCAGGAAAA
TGACAATAATGATGTAATGGATATTGAGTCAGAATTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F5EUI0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Glaesserella parasuis strain SC1401

74.93

98.886

0.741
  recA Vibrio cholerae strain A1552

74.631

94.429

0.705
  recA Vibrio cholerae O1 biovar El Tor strain E7946

74.631

94.429

0.705
  recA Pseudomonas stutzeri DSM 10701

75.077

90.529

0.68
  recA Neisseria gonorrhoeae MS11

74.224

89.694

0.666
  recA Neisseria gonorrhoeae MS11

74.224

89.694

0.666
  recA Neisseria gonorrhoeae strain FA1090

74.224

89.694

0.666
  recA Acinetobacter baylyi ADP1

67.442

95.822

0.646
  recA Ralstonia pseudosolanacearum GMI1000

73.016

87.744

0.641
  recA Acinetobacter baumannii D1279779

69.325

90.808

0.63
  recA Helicobacter pylori 26695

61.808

95.543

0.591
  recA Helicobacter pylori strain NCTC11637

61.808

95.543

0.591
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.095

93.593

0.591
  recA Bacillus subtilis subsp. subtilis str. 168

65.217

89.694

0.585
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64

90.529

0.579
  recA Streptococcus pneumoniae D39

57.759

96.936

0.56
  recA Streptococcus pneumoniae TIGR4

57.759

96.936

0.56
  recA Streptococcus pneumoniae R6

57.759

96.936

0.56
  recA Streptococcus pneumoniae Rx1

57.759

96.936

0.56
  recA Streptococcus mutans UA159

61.231

90.529

0.554
  recA Latilactobacillus sakei subsp. sakei 23K

61.994

89.415

0.554
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60

91.922

0.552
  recA Streptococcus pyogenes NZ131

60.308

90.529

0.546
  recA Streptococcus mitis SK321

60.185

90.251

0.543
  recA Streptococcus mitis NCTC 12261

60.185

90.251

0.543
  recA Lactococcus lactis subsp. cremoris KW2

57.716

90.251

0.521