Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   A9CBEGH2_RS04710 Genome accession   NZ_AP019711
Coordinates   911724..912746 (-) Length   340 a.a.
NCBI ID   WP_118276886.1    Uniprot ID   -
Organism   Amedibacterium intestinale strain 9CBEGH2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 906724..917746
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A9CBEGH2_RS04690 (A9CBEGH2_09130) miaB 907121..908557 (-) 1437 WP_118276887.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  A9CBEGH2_RS04695 (A9CBEGH2_09140) - 908644..908817 (-) 174 WP_115715025.1 4Fe-4S binding protein -
  A9CBEGH2_RS04700 (A9CBEGH2_09150) - 909013..909801 (-) 789 WP_115715026.1 TIGR00282 family metallophosphoesterase -
  A9CBEGH2_RS04705 (A9CBEGH2_09160) rny 909804..911357 (-) 1554 WP_115715027.1 ribonuclease Y -
  A9CBEGH2_RS04710 (A9CBEGH2_09170) recA 911724..912746 (-) 1023 WP_118276886.1 recombinase RecA Machinery gene
  A9CBEGH2_RS04715 (A9CBEGH2_09180) - 912760..913224 (-) 465 WP_115715029.1 CinA family protein -
  A9CBEGH2_RS04720 (A9CBEGH2_09190) pgsA 913225..913815 (-) 591 WP_115715030.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  A9CBEGH2_RS04725 (A9CBEGH2_09200) - 913799..914749 (-) 951 WP_163104371.1 RodZ family helix-turn-helix domain-containing protein -
  A9CBEGH2_RS04735 (A9CBEGH2_09210) - 915326..915637 (-) 312 WP_115715032.1 DivIVA domain-containing protein -
  A9CBEGH2_RS04740 (A9CBEGH2_09220) recU 915887..916414 (+) 528 WP_232057327.1 Holliday junction resolvase RecU -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 36694.30 Da        Isoelectric Point: 5.6702

>NTDB_id=73340 A9CBEGH2_RS04710 WP_118276886.1 911724..912746(-) (recA) [Amedibacterium intestinale strain 9CBEGH2]
MAMEEKNKKVDEKKDALLNDAIKAIEKQYGKGSIMKLGERAAVEIDAISSGSIKIDEALGIGGYPKGRIIEIYGPESSGK
TTLALHAIAEVQKKGGRAAFIDAENAIDPNYAKNLGVNIDELILSQPDSGEQALEITEMLVKSGAIDLVVVDSVAALVPQ
AELDGEMGDAQVGLQARLMSKAMRKLSGVMNKSECTAIFINQLREKVGVMFGNPETTPGGRALKFYSSVRLDIRRSEAIK
SGTDIIGNKVNVKVVKNKVAPPFKTAAIEIMYGEGISYVAELLDLCVDNEIVNKSGSWFSYNGEKIAQGKESAKAFIKAN
PALMEELAAKLKEKKERKED

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=73340 A9CBEGH2_RS04710 WP_118276886.1 911724..912746(-) (recA) [Amedibacterium intestinale strain 9CBEGH2]
ATGGCAATGGAAGAAAAGAATAAAAAAGTAGACGAAAAAAAAGATGCTTTACTAAATGATGCAATTAAAGCAATTGAAAA
ACAGTATGGCAAAGGGAGTATAATGAAGCTTGGGGAACGCGCTGCGGTTGAAATTGATGCTATCAGCAGCGGTTCTATTA
AAATTGATGAAGCTTTAGGAATCGGAGGATATCCAAAAGGGCGTATTATTGAAATCTATGGACCAGAGTCAAGTGGTAAG
ACTACTTTGGCTTTGCATGCAATTGCAGAGGTGCAAAAAAAAGGTGGACGTGCAGCTTTTATTGATGCGGAGAATGCAAT
TGATCCAAATTATGCAAAAAATTTAGGTGTAAATATTGATGAATTGATTCTTTCTCAGCCGGATAGTGGGGAGCAGGCGC
TGGAAATTACAGAAATGCTAGTTAAAAGTGGTGCAATTGACTTAGTTGTAGTTGACTCTGTTGCAGCCCTGGTACCACAA
GCAGAATTAGATGGTGAAATGGGAGATGCACAGGTTGGGTTACAGGCTCGTTTGATGTCAAAGGCGATGCGTAAATTAAG
TGGTGTCATGAACAAAAGTGAATGTACTGCTATCTTCATTAACCAGTTAAGAGAAAAAGTTGGAGTTATGTTTGGAAATC
CGGAAACAACACCTGGAGGAAGAGCTTTAAAGTTTTATTCTAGTGTTCGTTTGGATATTCGACGCAGTGAGGCTATTAAA
AGCGGTACGGATATTATTGGAAACAAGGTAAATGTAAAAGTTGTAAAAAACAAAGTGGCTCCACCTTTCAAAACAGCTGC
TATTGAAATTATGTATGGCGAAGGAATTTCTTATGTGGCAGAACTGCTTGACTTATGTGTTGATAATGAAATTGTGAATA
AAAGTGGTTCCTGGTTTTCTTATAATGGAGAAAAAATTGCACAAGGCAAAGAATCAGCAAAAGCTTTTATTAAAGCAAAT
CCTGCGTTAATGGAAGAGCTTGCTGCTAAGTTAAAAGAAAAGAAAGAACGAAAGGAGGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(18-277)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

67.601

94.412

0.638
  recA Streptococcus pyogenes NZ131

64.478

98.529

0.635
  recA Streptococcus mitis SK321

64.072

98.235

0.629
  recA Streptococcus mitis NCTC 12261

64.072

98.235

0.629
  recA Streptococcus pneumoniae D39

63.69

98.824

0.629
  recA Streptococcus pneumoniae Rx1

63.69

98.824

0.629
  recA Streptococcus pneumoniae R6

63.69

98.824

0.629
  recA Streptococcus pneumoniae TIGR4

63.69

98.824

0.629
  recA Streptococcus mutans UA159

63.664

97.941

0.624
  recA Lactococcus lactis subsp. cremoris KW2

63.473

98.235

0.624
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.87

100

0.618
  recA Latilactobacillus sakei subsp. sakei 23K

65.109

94.412

0.615
  recA Helicobacter pylori strain NCTC11637

60.615

95.588

0.579
  recA Vibrio cholerae strain A1552

60.494

95.294

0.576
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.494

95.294

0.576
  recA Helicobacter pylori 26695

60

95.588

0.574
  recA Acinetobacter baumannii D1279779

59.077

95.588

0.565
  recA Glaesserella parasuis strain SC1401

59.813

94.412

0.565
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.259

95.294

0.565
  recA Acinetobacter baylyi ADP1

58.769

95.588

0.562
  recA Neisseria gonorrhoeae strain FA1090

61.165

90.882

0.556
  recA Neisseria gonorrhoeae MS11

61.165

90.882

0.556
  recA Neisseria gonorrhoeae MS11

61.165

90.882

0.556
  recA Pseudomonas stutzeri DSM 10701

57.846

95.588

0.553
  recA Ralstonia pseudosolanacearum GMI1000

59.032

91.176

0.538
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.878

91.471

0.529

Multiple sequence alignment