Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SAP2_RS07815 Genome accession   NZ_AP019698
Coordinates   1621956..1623008 (-) Length   350 a.a.
NCBI ID   WP_002511011.1    Uniprot ID   -
Organism   Staphylococcus arlettae strain P2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1616956..1628008
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAP2_RS07800 (SAP2_15550) - 1618753..1619544 (-) 792 WP_002511014.1 TIGR00282 family metallophosphoesterase -
  SAP2_RS07805 (SAP2_15560) - 1619705..1619920 (+) 216 WP_002511013.1 hypothetical protein -
  SAP2_RS07810 (SAP2_15570) rny 1619998..1621557 (-) 1560 WP_002511012.1 ribonuclease Y -
  SAP2_RS07815 (SAP2_15580) recA 1621956..1623008 (-) 1053 WP_002511011.1 recombinase RecA Machinery gene
  SAP2_RS07820 (SAP2_15590) - 1623162..1624310 (-) 1149 WP_002511010.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  SAP2_RS07825 (SAP2_15600) pgsA 1624449..1625027 (-) 579 WP_002511009.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  SAP2_RS07830 (SAP2_15610) - 1625072..1625464 (-) 393 WP_002511008.1 helix-turn-helix domain-containing protein -
  SAP2_RS07835 (SAP2_15620) - 1625498..1626328 (-) 831 WP_002511007.1 DUF3388 domain-containing protein -
  SAP2_RS07840 (SAP2_15630) ymfI 1626466..1627170 (-) 705 WP_142019684.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 38072.99 Da        Isoelectric Point: 4.8715

>NTDB_id=73319 SAP2_RS07815 WP_002511011.1 1621956..1623008(-) (recA) [Staphylococcus arlettae strain P2]
MDNERQKALDTVIKNMEKSFGKGSVMKLGDNKARRVSSVSSGSVTLDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
EVQRNGGIAAFIDAEHALDPVYAEALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAVFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNR
TKIKVVKNKVAPPFRVAEVDIMYGKGISKEGELIDLGVENDIVDKSGAWYSYNGERMGQGKENVKTYLKENPEIKKDIDQ
KLREKLGIFDGDIEETEESEEATPNLFDEE

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=73319 SAP2_RS07815 WP_002511011.1 1621956..1623008(-) (recA) [Staphylococcus arlettae strain P2]
TTGGATAACGAACGTCAAAAAGCTTTAGATACAGTTATAAAAAATATGGAAAAATCATTTGGTAAAGGTTCAGTGATGAA
ATTAGGCGACAATAAAGCTCGCAGAGTATCAAGTGTTTCAAGTGGTTCTGTAACATTGGATAATGCCTTAGGAGTAGGTG
GTTATCCTAAAGGAAGAATTATTGAAATCTATGGACCAGAAAGTTCAGGTAAAACGACTGTTGCATTACATGCTATAGCT
GAAGTACAAAGAAATGGTGGAATTGCAGCATTTATCGATGCCGAACACGCACTTGACCCTGTTTATGCTGAAGCTTTAGG
TGTCGATATTGATAATTTATATTTATCACAACCTGACCACGGAGAACAAGGTCTTGAAATCGCAGAGGCTTTTGTTAGAA
GTGGTGCGGTAGATATCGTAGTAGTAGACTCAGTTGCAGCATTAACGCCAAAAGCTGAAATTGAAGGTGAAATGGGAGAT
ACTCATGTAGGCTTACAAGCAAGATTAATGTCTCAAGCGTTACGTAAACTATCAGGGGCAATTTCTAAATCTAACACTAC
TGCAGTATTTATTAACCAAATCCGTGAAAAAGTAGGCGTTATGTTCGGTAATCCTGAAACAACACCTGGTGGACGTGCAT
TGAAATTCTACAGTTCAGTGCGTTTAGAAGTACGTCGTGCAGAGCAATTAAAACAAGGTCAAGACATTGTAGGTAATAGA
ACAAAAATTAAAGTTGTTAAAAATAAAGTGGCACCTCCTTTCAGAGTAGCAGAAGTTGATATTATGTACGGGAAAGGTAT
TTCTAAAGAAGGTGAACTTATCGATTTAGGTGTTGAAAATGATATCGTCGATAAGTCAGGCGCATGGTATTCATATAATG
GAGAGCGTATGGGTCAAGGTAAGGAAAATGTAAAAACTTATCTAAAAGAAAACCCTGAAATTAAAAAGGATATTGATCAA
AAATTACGTGAAAAATTAGGTATTTTTGATGGTGATATCGAAGAAACCGAAGAATCCGAAGAAGCAACACCGAATTTATT
CGATGAAGAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

77.607

93.143

0.723
  recA Latilactobacillus sakei subsp. sakei 23K

68.391

99.429

0.68
  recA Streptococcus mitis SK321

64.088

100

0.663
  recA Streptococcus pneumoniae Rx1

66

100

0.66
  recA Streptococcus pneumoniae D39

66

100

0.66
  recA Streptococcus pneumoniae R6

66

100

0.66
  recA Streptococcus pneumoniae TIGR4

66

100

0.66
  recA Streptococcus mitis NCTC 12261

65.057

100

0.654
  recA Streptococcus mutans UA159

65.988

98.286

0.649
  recA Streptococcus pyogenes NZ131

67.781

94

0.637
  recA Lactococcus lactis subsp. cremoris KW2

66.163

94.571

0.626
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.93

97.429

0.623
  recA Acinetobacter baylyi ADP1

62.644

99.429

0.623
  recA Acinetobacter baumannii D1279779

62.464

99.714

0.623
  recA Neisseria gonorrhoeae MS11

65.35

94

0.614
  recA Neisseria gonorrhoeae MS11

65.35

94

0.614
  recA Neisseria gonorrhoeae strain FA1090

65.35

94

0.614
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.951

93.143

0.614
  recA Vibrio cholerae strain A1552

65.951

93.143

0.614
  recA Ralstonia pseudosolanacearum GMI1000

64.22

93.429

0.6
  recA Helicobacter pylori 26695

63.72

93.714

0.597
  recA Helicobacter pylori strain NCTC11637

63.415

93.714

0.594
  recA Pseudomonas stutzeri DSM 10701

60.411

97.429

0.589
  recA Glaesserella parasuis strain SC1401

62.037

92.571

0.574
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.423

94.571

0.571
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.562

91.429

0.563

Multiple sequence alignment