Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   N7277_RS01760 Genome accession   NZ_CP104850
Coordinates   398117..399115 (+) Length   332 a.a.
NCBI ID   WP_274780060.1    Uniprot ID   -
Organism   Cloacibacterium sp. TD35     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 393117..404115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7277_RS01725 (N7277_01725) - 393173..393424 (+) 252 WP_069800586.1 type B 50S ribosomal protein L31 -
  N7277_RS01730 (N7277_01730) - 393666..394826 (+) 1161 WP_274780055.1 GlmU family protein -
  N7277_RS01735 (N7277_01735) - 395019..395528 (+) 510 WP_104794192.1 sigma-70 family RNA polymerase sigma factor -
  N7277_RS01740 (N7277_01740) - 395540..396178 (+) 639 WP_274780056.1 hypothetical protein -
  N7277_RS01745 (N7277_01745) - 396192..396758 (+) 567 WP_274780057.1 DUF4252 domain-containing protein -
  N7277_RS01750 (N7277_01750) - 396839..397351 (+) 513 WP_274780058.1 DUF4252 domain-containing protein -
  N7277_RS01755 (N7277_01755) - 397383..397907 (-) 525 WP_274780059.1 phosphoglycerate mutase family protein -
  N7277_RS01760 (N7277_01760) recA 398117..399115 (+) 999 WP_274780060.1 recombinase RecA Machinery gene
  N7277_RS01765 (N7277_01765) - 399221..399535 (-) 315 WP_274780061.1 MGMT family protein -
  N7277_RS01770 (N7277_01770) - 399626..400603 (-) 978 WP_274780062.1 deoxyhypusine synthase family protein -
  N7277_RS01775 (N7277_01775) arfB 400787..401209 (-) 423 WP_342455290.1 alternative ribosome rescue aminoacyl-tRNA hydrolase ArfB -
  N7277_RS01780 (N7277_01780) - 401209..402228 (-) 1020 WP_274780063.1 AMP-binding protein -
  N7277_RS01785 (N7277_01785) argS 402230..403987 (-) 1758 WP_274780064.1 arginine--tRNA ligase -

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 35846.34 Da        Isoelectric Point: 5.9015

>NTDB_id=732629 N7277_RS01760 WP_274780060.1 398117..399115(+) (recA) [Cloacibacterium sp. TD35]
MSSIDDKKKALALVLEKMDKTYGKGTVMKMGDNAVEEVEVIPSGSLGLDIALGVGGYPKGRVIEIYGPESSGKTTLTMHA
IAESQKQGGIAAFIDAEHAFDAVYAKKLGIDVENLIISQPDNGEQALEIADNLIRSGAIDIVVIDSVAALTPKAEIEGEM
GDSKMGLHARLMSQALRKLTATISRTKCTVIFINQLREKIGVMFGNPETTTGGNALKFYASVRIDIRRSGSPIKVGEDAV
GNRVKVKIVKNKVAPPFKNTEFDIMYGEGISKVGEILDLGVEFDIVKKSGSWFSYGDTKLGQGRDAVKELLKDNPELLEE
LSEKIKEAIKNK

Nucleotide


Download         Length: 999 bp        

>NTDB_id=732629 N7277_RS01760 WP_274780060.1 398117..399115(+) (recA) [Cloacibacterium sp. TD35]
ATGAGCAGTATAGACGATAAGAAAAAAGCACTCGCATTAGTCCTCGAAAAAATGGATAAAACCTACGGAAAAGGTACCGT
AATGAAAATGGGAGACAATGCAGTAGAAGAAGTAGAAGTAATTCCTAGTGGTTCACTTGGTTTAGATATTGCTTTGGGAG
TTGGTGGTTATCCAAAAGGAAGAGTCATCGAAATTTACGGTCCTGAATCTTCAGGTAAAACCACACTTACTATGCACGCG
ATTGCAGAATCTCAAAAACAAGGCGGAATTGCAGCTTTTATAGATGCAGAACACGCTTTTGATGCGGTTTATGCTAAAAA
ATTAGGAATAGATGTAGAAAATTTAATTATTTCTCAACCAGATAATGGTGAACAAGCATTAGAAATTGCAGATAATTTAA
TCCGTTCTGGAGCGATTGATATTGTGGTAATCGACTCTGTGGCAGCATTGACCCCAAAAGCTGAAATTGAAGGAGAAATG
GGTGATTCTAAAATGGGATTACATGCTAGATTAATGTCTCAAGCTTTGAGAAAATTAACAGCTACAATTTCTAGAACAAA
ATGCACCGTAATTTTCATTAACCAGTTAAGAGAAAAAATTGGCGTAATGTTCGGAAATCCTGAAACAACCACTGGTGGAA
ACGCACTGAAATTCTATGCTTCGGTAAGAATTGACATCAGAAGAAGTGGTTCTCCTATCAAAGTAGGCGAAGATGCTGTA
GGAAACCGCGTGAAAGTAAAAATTGTTAAAAACAAAGTTGCTCCGCCGTTTAAAAATACAGAATTCGATATTATGTACGG
TGAAGGAATTTCTAAAGTAGGCGAAATTCTAGATTTGGGTGTCGAGTTTGATATTGTTAAAAAATCTGGTTCTTGGTTCA
GCTATGGCGATACGAAACTAGGACAAGGTAGAGACGCAGTAAAAGAATTACTAAAAGATAATCCTGAACTTTTAGAGGAG
CTTTCTGAAAAAATAAAAGAGGCTATTAAAAACAAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

79.341

100

0.798
  recA Ralstonia pseudosolanacearum GMI1000

64.881

100

0.657
  recA Neisseria gonorrhoeae strain FA1090

65.635

97.289

0.639
  recA Neisseria gonorrhoeae MS11

65.635

97.289

0.639
  recA Neisseria gonorrhoeae MS11

65.635

97.289

0.639
  recA Helicobacter pylori 26695

64.242

99.398

0.639
  recA Helicobacter pylori strain NCTC11637

63.939

99.398

0.636
  recA Acinetobacter baumannii D1279779

63.692

97.892

0.623
  recA Bacillus subtilis subsp. subtilis str. 168

63.272

97.59

0.617
  recA Acinetobacter baylyi ADP1

62.5

98.795

0.617
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.883

98.193

0.617
  recA Glaesserella parasuis strain SC1401

61.846

97.892

0.605
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.856

98.494

0.599
  recA Vibrio cholerae strain A1552

60.856

98.494

0.599
  recA Pseudomonas stutzeri DSM 10701

60.559

96.988

0.587
  recA Lactococcus lactis subsp. cremoris KW2

59.633

98.494

0.587
  recA Latilactobacillus sakei subsp. sakei 23K

59.877

97.59

0.584
  recA Streptococcus mitis NCTC 12261

59.877

97.59

0.584
  recA Streptococcus mitis SK321

59.877

97.59

0.584
  recA Streptococcus pneumoniae TIGR4

59.259

97.59

0.578
  recA Streptococcus pneumoniae D39

59.259

97.59

0.578
  recA Streptococcus pneumoniae R6

59.259

97.59

0.578
  recA Streptococcus pneumoniae Rx1

59.259

97.59

0.578
  recA Streptococcus pyogenes NZ131

58.769

97.892

0.575
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.846

97.892

0.566
  recA Streptococcus mutans UA159

57.538

97.892

0.563